View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21618_low_4 (Length: 520)
Name: NF21618_low_4
Description: NF21618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21618_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 16992984 - 16992479
Alignment:
| Q |
1 |
tgcagatgctgaggtagtttccaccgatgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtctgagggtggtggt |
100 |
Q |
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||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16992984 |
tgcagatgccgaggtaatttccatcgatgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtctgagggtggtggt |
16992885 |
T |
|
| Q |
101 |
gaaagtggaggaagtggtgattttgatgctaaagatggaaagtttgttgatgaaaagtgtggggcacaagataacctgatttcgataaattcagatgagt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16992884 |
gaaagtggaggaagtg---attttgatgctaaagatggaaagtttgttgatgaaaagtgtggggcacaagataacctgatttcgataaattcagatgagt |
16992788 |
T |
|
| Q |
201 |
atggtgaaagtgaagaacactctgttgattctgatgctgataatgaagaagaagnnnnnnnnnnnnnnnnnnnngcagatgatgttgttaaaagtgatga |
300 |
Q |
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| T |
16992787 |
atggtgaaagtgaagaacactctgttgattctgatcctgataacgaagaagaagaaaaagaaaaagaaaaa---gcagatgatgttgttaaaagtgatga |
16992691 |
T |
|
| Q |
301 |
aagtggtggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattctgaagagagtgaggaggatgattcggatgagagtgaa |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
16992690 |
aagtgggggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattctgaagagagtaaggaggatgattcggataagagtgaa |
16992591 |
T |
|
| Q |
401 |
gcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctcctcttatgttaatg |
500 |
Q |
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| T |
16992590 |
gcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctcctcttatgttaatg |
16992491 |
T |
|
| Q |
501 |
atgatgatgatg |
512 |
Q |
| |
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|||||||||||| |
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| T |
16992490 |
atgatgatgatg |
16992479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 469
Target Start/End: Original strand, 10601660 - 10601747
Alignment:
| Q |
382 |
tgattcggatgagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgat |
469 |
Q |
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|||||| ||||| ||||||| |||||| |||| ||||| |||||| ||||||||||| |||||||||||| ||||||||||||||| |
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| T |
10601660 |
tgattctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgat |
10601747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 17008185 - 17008126
Alignment:
| Q |
406 |
tgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatga |
465 |
Q |
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| T |
17008185 |
tgattctagtgatgaagattttaaagttgaggagctgaatgagatttctgacaatgatga |
17008126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 17008625 - 17008487
Alignment:
| Q |
122 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg---ggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---ag |
215 |
Q |
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|||||||||||||| ||||| |||||||| |||| ||||| || ||||||||| |||||| ||| ||| ||||||||| |||| ||||| || |
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| T |
17008625 |
tttgatgctaaagagggaaactttgttgagaaaaaatgtggtttggatgaagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaag |
17008526 |
T |
|
| Q |
216 |
aacactctgttgattctgatgctgataatgaagaagaag |
254 |
Q |
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|||||||||||| || || || ||||||||||||||||| |
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| T |
17008525 |
aacactctgttggttttggtggtgataatgaagaagaag |
17008487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 10601253 - 10601293
Alignment:
| Q |
122 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg |
162 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||| |
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| T |
10601253 |
tttgatgcgaaagatggaaagtttgttgacgaaaagtgtgg |
10601293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 290 - 510
Target Start/End: Original strand, 35262596 - 35262819
Alignment:
| Q |
290 |
aaaagtgatgaaagtggtggaattggtaggttttctgatcaaggtgaaaaggttataattgatttggatgattctgaagagagtgagg---aggatgatt |
386 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35262596 |
aaaagtgatgaaagtgggggaattggtaggttttctgataaaggtgaaaaggttataattgatttggatgattctgaagagagtgaggaggaggatgatt |
35262695 |
T |
|
| Q |
387 |
cggatgagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctc |
486 |
Q |
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| ||||||||||||| |||||| ||||||||||||||||||| ||||||||| | |||||| |||||||||||| |||| |||||| ||||||| ||||| |
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| T |
35262696 |
ctgatgagagtgaagaaaatgactctagtgatgaagattttgcagttgatgaactgaatgaaatttcagacaatcatgatgatgacagttcttctagctc |
35262795 |
T |
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| Q |
487 |
ctcttatgttaatgatgatgatga |
510 |
Q |
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|||||||||| ||||||||||||| |
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| T |
35262796 |
ctcttatgttgatgatgatgatga |
35262819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 35262417 - 35262548
Alignment:
| Q |
129 |
ctaaagatggaaagtttgttgatgaaaagtgtg---gggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---agaacactc |
222 |
Q |
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|||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
35262417 |
ctaaagatggaaagtttgttgatgaaaattgtgagagggaacaagataacccggtttcgataagttcagatgagtatggtgaaagtgatgaagaacactt |
35262516 |
T |
|
| Q |
223 |
tgttgattctgatgctgataatgaagaagaag |
254 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35262517 |
tgttgattctgatgctgataatgaagaagaag |
35262548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 35262331 - 35262418
Alignment:
| Q |
1 |
tgcagatgctgaggtagtttccaccgatgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtct |
88 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | || ||||||||||| ||||||||| |
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| T |
35262331 |
tgcagatgctgaggtagtttccatcgatgatgatgaatatgaagatgttggtcaagaaggttcagagcatagtgatgacaagatgtct |
35262418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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