View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21618_low_5 (Length: 475)
Name: NF21618_low_5
Description: NF21618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21618_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 39471516 - 39471062
Alignment:
| Q |
1 |
catagaattgcagtcaggaccatgtcaaaaatacaggtctacaaagctccaaaacagtccacatccatatatagtaaaaacaagtggtagcctgcactgc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471516 |
cataaaattgcagtcaggaccatgtcaaaaatacaggtctacaaagctccaaaacagtccacatccatatatagtaaaaacaagtggtagcctgcactgc |
39471417 |
T |
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| Q |
101 |
attgtcctttgaaatacgcatgccnnnnnnnnnnnnnnnnnnnntattattgaataataaataattccaacaagataataacaacaatctagttttacan |
200 |
Q |
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| T |
39471416 |
attgtcctttgtcatacgcatgcccacacaccacacaccacacatattattgaataataaataattccaacaagataataacaacaatccagttttacat |
39471317 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnnnnncagatagtttttacatattcttgtacaccacaaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccatcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471316 |
ttttttttcctttttt-cagatagtttttacatattcttgtacaccacaaaaacttgcacggtccatatataaggtagtagtaaatagccttcaccatcc |
39471218 |
T |
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| Q |
301 |
atcaattctcccataaataatataaagacaaacatttcaatctcatgccataaagttctcatatcatgccatcccgcaaagccatgacatcactcacaaa |
400 |
Q |
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| T |
39471217 |
atcaattctcccataaataatataaagacaaacatttcaatctcatgccataaagttctcatatcatgccatcccgcaaagccatgacatcactcacaaa |
39471118 |
T |
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| Q |
401 |
gatttcttttattatgatactaaatctctacacgaattcatctattcctgttccta |
456 |
Q |
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| T |
39471117 |
ggtttcttttattatgatactaaatctctacacgaattcatctattcctgttccta |
39471062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 39464898 - 39464853
Alignment:
| Q |
376 |
gcaaagccatgacatcactcacaaagatttcttttattatgatact |
421 |
Q |
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| T |
39464898 |
gcaaagccatgacatcactcacaaagattcctcttattatgatact |
39464853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 39465133 - 39465092
Alignment:
| Q |
27 |
aaaaatacaggtctacaaagctccaaaacagtccacatccat |
68 |
Q |
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| T |
39465133 |
aaaaatacaggtctacaaagctccaaaacagttcatatccat |
39465092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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