View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21618_low_7 (Length: 354)
Name: NF21618_low_7
Description: NF21618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21618_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 34166833 - 34167158
Alignment:
| Q |
14 |
gagatgaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgt |
113 |
Q |
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| T |
34166833 |
gagaagaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgt |
34166932 |
T |
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| Q |
114 |
aatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcatttaagc |
213 |
Q |
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| T |
34166933 |
aatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcatttaagc |
34167032 |
T |
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| Q |
214 |
cagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtg-nnnnnnnacccatcagtaaaggtacaaactaaaatgttg |
312 |
Q |
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| T |
34167033 |
cagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatgttg |
34167132 |
T |
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| Q |
313 |
cgtcctaggcatgatgatgtgttgtt |
338 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34167133 |
cgtcctaggcatgatgatgtgttgtt |
34167158 |
T |
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