View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21618_low_8 (Length: 303)
Name: NF21618_low_8
Description: NF21618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21618_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 16992981 - 16993261
Alignment:
| Q |
1 |
tgcaggaacaacaaaaggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatcactctttctccgctttgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16992981 |
tgcaggaacaacaaaaggttcttcagtcatctttctttttttagaaccagaaacatattccaaacccttatcttcttcatcactctttctccgctttgat |
16993080 |
T |
|
| Q |
101 |
gacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcgaaacaccgaataacggtacattcttgctagaaaaaccagcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16993081 |
gacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcgaaacaccgaataacggaacattcttgctagaaaaaccagcca |
16993180 |
T |
|
| Q |
201 |
tcacaaacaacaacaacnnnnnnnnnnccaaacaagaacaagaaacaacttgtattcgtttaatgtctctttgtctgtgttagg |
284 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16993181 |
tcacaaacaacaacaac---aaaaaaaccaaacaagaacaagaaacaacttgtattcgtttaatgtctctttgtctgtgttagg |
16993261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 16824899 - 16824980
Alignment:
| Q |
84 |
tctttctccgctttgatgacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcgaaacacc |
165 |
Q |
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| T |
16824899 |
tctttctccgttttgatgacccaacaagtggaacacaactaaacaatggaacatttttgctacgagttctgctagaaacacc |
16824980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 10600871 - 10600805
Alignment:
| Q |
43 |
agaaccagaaacatattccaaacccttatcttcttcatcactctttctccgctttgatgacccacca |
109 |
Q |
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| T |
10600871 |
agaaccagaaagagagtcaaaactcatatcatcttcatcactctttctccgctttgatgaaccacca |
10600805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 16969404 - 16969450
Alignment:
| Q |
115 |
aagagaaccaaacaacggaacattcttgctacgagttctgctcgaaa |
161 |
Q |
| |
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|||| |||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
16969404 |
aagacaaccaaacaatggaacatttttgctacgagttctgctagaaa |
16969450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 17008718 - 17008759
Alignment:
| Q |
114 |
aaagagaaccaaacaacggaacattcttgctacgagttctgc |
155 |
Q |
| |
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| T |
17008718 |
aaagagaaccaaacaatggcacatttttgctacgagttctgc |
17008759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 17008845 - 17008878
Alignment:
| Q |
121 |
accaaacaacggaacattcttgctacgagttctg |
154 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
17008845 |
accaaacaatggaacattcttgctacgagttctg |
17008878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 35262334 - 35262170
Alignment:
| Q |
1 |
tgcaggaacaacaaaaggttcttcagtcatctttcnnnnnnnagaaccagaaacatattccaaacccttatcttcttcatcactctttctccgctttgat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
35262334 |
tgcaggaacaacaaaaggttcttcgttcatcttcctttttttagaacgagaaacatagtccaaccccttatcttcttcatcactctttctccgttttgat |
35262235 |
T |
|
| Q |
101 |
gacccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctcgaaacacc |
165 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35262234 |
gaaccaccaagtaaaagagaaccaaacaacggaacattcttgctacgagttctgctagaaacacc |
35262170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 35262182 - 35262149
Alignment:
| Q |
183 |
tgctagaaaaaccagccatcacaaacaacaacaa |
216 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
35262182 |
tgctagaaacaccagccatcacaaacaacaacaa |
35262149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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