View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21618_low_9 (Length: 299)
Name: NF21618_low_9
Description: NF21618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21618_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 38061818 - 38062099
Alignment:
| Q |
1 |
ctattcgttggagcggcataggcnnnnnnn-cggttattgtatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatatta |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38061818 |
ctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatatta |
38061917 |
T |
|
| Q |
100 |
acactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaagcttgtagtacaatgaagaaattctctgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
|
|
| T |
38061918 |
acactataataacagaaacagaaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtacaatgaagaaattctcggt |
38062017 |
T |
|
| Q |
200 |
tactattggaattgaaaggaataaacttgaagtccatagtggtaatattccaattannnnnnngaaatcttccacttgttga |
281 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38062018 |
tactattggaattgaaaggaatagacttgaagtccatagtggtaatattccaattatttttttgaaatcttccacttgttga |
38062099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 281
Target Start/End: Original strand, 39929180 - 39929418
Alignment:
| Q |
40 |
tatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaa |
139 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||| ||||||||||| | || ||||||||| ||||||| |||||| ||||||||||||||||| ||| |
|
|
| T |
39929180 |
tatgccaacttggcaatagcaccctgtcaagaaaagtgaggaaaatgggtgctgatattaagactataa---cagaaatagaaccagctgggatttcaaa |
39929276 |
T |
|
| Q |
140 |
atgagatcctacagaacgatccatgattaaagcttgtagtacaatgaagaaattctctgttactattggaattgaaaggaataaacttgaagtccatagt |
239 |
Q |
| |
|
||| |||||| |||||||||||||| ||||||||| |||| ||||||| | | |||||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
39929277 |
atggtatcctaaagaacgatccatgactaaagcttgaagtataatgaagtccatttgcattactattggaattgataggaatagacttgaagtccataat |
39929376 |
T |
|
| Q |
240 |
ggtaatattccaattannnnnnngaaatcttccacttgttga |
281 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| |
|
|
| T |
39929377 |
ggtaatattccaactatttttttgaaatcttccacttgttga |
39929418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 39695283 - 39695143
Alignment:
| Q |
40 |
tatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaa |
139 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| ||||||||||| | || |||||| || ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
39695283 |
tatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatatcaagactataa---cagaaacagaactagctgggattttaaa |
39695187 |
T |
|
| Q |
140 |
atgagatcctacagaacgatccatgattaaagcttgtagtacaa |
183 |
Q |
| |
|
||| | ||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
39695186 |
atggggtcctaatgaacgatccatgactaaagcttgaagtacaa |
39695143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 39704195 - 39704057
Alignment:
| Q |
40 |
tatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaa |
139 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||| || |
|
|
| T |
39704195 |
tatgccaacatggcaatagcactctgtcaagaaaggtgaggaaaatggatgttgatattatgact---ataacagaaacagaaccagctggaattttgaa |
39704099 |
T |
|
| Q |
140 |
atgagatcctacagaacgatccatgattaaagcttgtagtac |
181 |
Q |
| |
|
||| | ||||| || ||||||||| ||||||||| ||||| |
|
|
| T |
39704098 |
atggggtcctaatgagcgatccatggctaaagcttgaagtac |
39704057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 39934832 - 39934972
Alignment:
| Q |
40 |
tatgccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacagaaccagctgggattttaaa |
139 |
Q |
| |
|
||||||||| |||||| | ||| ||||||||||| ||||| ||||| | || ||||||||| || ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
39934832 |
tatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagac---aataacagaaacaaaactagctgggattttaaa |
39934928 |
T |
|
| Q |
140 |
atgagatcctacagaacgatccatgattaaagcttgtagtacaa |
183 |
Q |
| |
|
||| | ||||| ||| |||||||||| ||||||||| ||||||| |
|
|
| T |
39934929 |
atggggtcctaaagaccgatccatgactaaagcttgaagtacaa |
39934972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University