View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21619_high_1 (Length: 552)
Name: NF21619_high_1
Description: NF21619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21619_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 31557544 - 31557697
Alignment:
| Q |
12 |
catcatcaaactaaaaataagagattctcctcccaacccaccttgaacccataaaagaaatttttcaaaatagactcatttagcatagaattcgaccttt |
111 |
Q |
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| T |
31557544 |
catcatcaaactaaaaataagagattctcctcccagcccaccttgaacccataaaacaaatttttcaaaatagactcatttagcatagaattcgaccatt |
31557643 |
T |
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| Q |
112 |
cgattgctatcaaaaatagaaaaggagatgaacctttgtcaaagaccacacccc |
165 |
Q |
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| T |
31557644 |
ccattgctatcaaaaatagaaaaggaaacgaacctttgtcaaagaccacacccc |
31557697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 248 - 340
Target Start/End: Original strand, 31558290 - 31558381
Alignment:
| Q |
248 |
agtattctagttgaattactgatagttttgggaaagtctataatatattgataaaagtacattcgtcttatttccctaacaaaataaatatat |
340 |
Q |
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| T |
31558290 |
agtattctagttgaattactgatagttttgggaaagtctataatatattgataaaagt-cattcgtcttatttccctaacaaattaaatatat |
31558381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 31558205 - 31558240
Alignment:
| Q |
163 |
ccctttttcctctaatgtctcctcatcataagatgt |
198 |
Q |
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| T |
31558205 |
ccctttttcctctaatgtctcctcatcataagatgt |
31558240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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