View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21619_high_7 (Length: 215)
Name: NF21619_high_7
Description: NF21619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21619_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 48171947 - 48172161
Alignment:
| Q |
1 |
tggaaagaaaactcaaagcagttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattcag |
100 |
Q |
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| T |
48171947 |
tggaaagaaaactcaaagcagttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattcag |
48172046 |
T |
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| Q |
101 |
atccttttctggataatttttattcagatttggatctgccatatctccatatcttttaggatctctaaatattggttgtgcctgctcagcagttacaagt |
200 |
Q |
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| T |
48172047 |
atccttttctggataatttttattcagatttggatctgccatatctccatatcttttaggatctctaaatattggttgtgcctgctcagcagttacaagt |
48172146 |
T |
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| Q |
201 |
ataaaattatcaaaa |
215 |
Q |
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||||||||||||||| |
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| T |
48172147 |
ataaaattatcaaaa |
48172161 |
T |
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Back To:
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Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 35288546 - 35288401
Alignment:
| Q |
1 |
tggaaagaaaactcaaagcagttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattcag |
100 |
Q |
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||||||||||||||| ||| || ||||| || | ||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||| ||||||| || |
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| T |
35288546 |
tggaaagaaaactcagagcggtcacaacgtcgccgatcaaaggacgagcttctggttcctcttgtaagcacatggctgctattgcaacagcttgattaag |
35288447 |
T |
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| Q |
101 |
atccttttctggataatttttattcagatttggatctgccatatct |
146 |
Q |
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| T |
35288446 |
atccttttctgggaattgtttgttgagaagtggatctgccatatct |
35288401 |
T |
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