View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21619_low_1 (Length: 760)

Name: NF21619_low_1
Description: NF21619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21619_low_1
NF21619_low_1
[»] chr2 (8 HSPs)
chr2 (96-737)||(6915277-6915918)
chr2 (592-690)||(10543505-10543603)
chr2 (592-690)||(10471307-10471405)
chr2 (592-690)||(28106207-28106305)
chr2 (610-690)||(27966389-27966469)
chr2 (592-690)||(10859023-10859121)
chr2 (611-673)||(9081351-9081413)
chr2 (696-737)||(10507349-10507390)
[»] chr7 (8 HSPs)
chr7 (231-335)||(15040241-15040345)
chr7 (154-227)||(15040064-15040137)
chr7 (592-690)||(15044800-15044898)
chr7 (505-595)||(15043971-15044061)
chr7 (340-395)||(15041840-15041895)
chr7 (445-507)||(15043792-15043854)
chr7 (692-734)||(15045570-15045612)
chr7 (98-152)||(15039923-15039977)
[»] chr8 (2 HSPs)
chr8 (182-251)||(43895529-43895598)
chr8 (182-251)||(44305953-44306022)
[»] chr5 (2 HSPs)
chr5 (311-389)||(35856854-35856932)
chr5 (592-690)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 96 - 737
Target Start/End: Complemental strand, 6915918 - 6915277
Alignment:
Q  96 cttaatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcc 195  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6915918 cttaatgcgtttaacataaatatctaagtgtagttctcccattccagaaatgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcc 6915819  T
Q  196 tctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915818 tctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatag 6915719  T
Q  296 aagtcattgtgtatttaaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat 395  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915718 aagtcattgtgtatttaaccgacccatcagtaaatgtatcgctggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat 6915619  T
Q  396 gtcattcatctcattagaatgcatctcaactaagcgaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccc 495  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6915618 gtcgttcatctcattagaatgcatctgaactaagcgaggaaccttaattttctttccagtgctaacattaacaataaaatcacccttccgaatgacaccc 6915519  T
Q  496 tcataaactcttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 595  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6915518 tcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccatcgggacttccagtcagctgaacct 6915419  T
Q  596 tctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtacccccgtgtt 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6915418 tctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatccagaagtggttgtacccccgtgtt 6915319  T
Q  696 tttgacagcactacccatgaataccggtataaatttccgtgc 737  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6915318 tttgacagcactacccatgaataccggtataaatttccgtgc 6915277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 592 - 690
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  592 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 690  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 690
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  592 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 690  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 690
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  592 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 690  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 610 - 690
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  610 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 690  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 690
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  592 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 690  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 673
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  611 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 673  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 737
Target Start/End: Original strand, 10507349 - 10507390
Alignment:
Q  696 tttgacagcactacccatgaataccggtataaatttccgtgc 737  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgc 10507390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
Q  231 ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||||||     
T  15040241 ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa 15040340  T
Q  331 gtatc 335  Q
    |||||    
T  15040341 gtatc 15040345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
Q  154 tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 227  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15040064 tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 15040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 592 - 690
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  592 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 690  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 505 - 595
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
Q  505 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 595  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
Q  340 gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15041840 gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat 15041895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 445 - 507
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
Q  445 ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt 507  Q
    ||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  15043792 ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt 15043854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 692 - 734
Target Start/End: Original strand, 15045570 - 15045612
Alignment:
Q  692 tgtttttgacagcactacccatgaataccggtataaatttccg 734  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccg 15045612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 15039923 - 15039977
Alignment:
Q  98 taatgcatttaacataaatatctaagtgtagttctcccattccagaaatgattgt 152  Q
    |||||| || |||||| ||||||||||| |||||||||||||||||||| |||||    
T  15039923 taatgcgttcaacatagatatctaagtgcagttctcccattccagaaataattgt 15039977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
Q  182 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 251  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  43895529 ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac 43895598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
Q  182 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 251  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  44305953 ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac 44306022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
Q  311 taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc 389  Q
    |||| ||||||||||||||||| || || | ||||||||||||| || ||||| |||| ||||| |||||||| |||||    
T  35856932 taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc 35856854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 690
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  592 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 690  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University