View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21619_low_4 (Length: 304)
Name: NF21619_low_4
Description: NF21619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21619_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 2259112 - 2259397
Alignment:
| Q |
3 |
aatcaaccttaaaacaattagcaacttaactttgaagtgggaattcaatgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatat |
102 |
Q |
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| T |
2259112 |
aatcaaccttaaaacaattagcaacttaactttgaagtgggaattcaatgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatat |
2259211 |
T |
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| Q |
103 |
tttccttcatggaatggtttaatatttgcagtgagagaaattgatggaactcttgtttggaaaaagaatttgacaaaattaactggtctagattcaatag |
202 |
Q |
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| T |
2259212 |
tttccttcatggaatggtttaatatttgcagtgagagaaattgatggaactcttgtttggaaaaagaatttgacaaaattaactggtctagattcaatag |
2259311 |
T |
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| Q |
203 |
gttttattgcaaatgttaattggacagtggctagggcaacaccaactatagcagttgatgaggatcttgtgattgtgggaatatat |
288 |
Q |
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| T |
2259312 |
gttttattgcaaatgttaattggacagtggctagggcaacaccaactatagcagttgatgaggatcttgtgattgtgggaatatat |
2259397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 2229956 - 2229825
Alignment:
| Q |
33 |
tttgaagtgggaattcaatgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatattttccttcatggaatggtttaatatttgca |
132 |
Q |
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| T |
2229956 |
tttgaagtggaaattcaatgcaggcaaagatattacagcaacaccaacaatatacaatggtacaatttattttccatgctggaatggtaacatatatgca |
2229857 |
T |
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| Q |
133 |
gtgagagaaattgatggaactcttgtttggaa |
164 |
Q |
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| T |
2229856 |
attaaacaaattgatggatcacttgtttggaa |
2229825 |
T |
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