View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2161_high_1 (Length: 337)
Name: NF2161_high_1
Description: NF2161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2161_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 15632863 - 15632565
Alignment:
| Q |
21 |
ttaactcggttggaggagctatgtgcatgtccccatgtttctggaatctgtggcattacataaacccaaaccattaccatcataaattagtcaaatattg |
120 |
Q |
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| T |
15632863 |
ttaactcagctggaggagctatgtgcatgtccctatgtttctggaatctgtggcattacataaacccaaaccattaccatcataaattagtcaaatattg |
15632764 |
T |
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| Q |
121 |
gataaattactagggcaatacaaaccaagctgcatatactgatataccaca------gacaggatgcccgactccgaccaatctccctcccttgctctca |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15632763 |
gataaattactagggcaatacaaaccaagcagcatatactgatataccacagacacagacaggatgcccgactccgaccaatctccctcccttgctctca |
15632664 |
T |
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| Q |
215 |
tcgacgcataccctcaaataactccctctcatgctctcctcgtcctcgacaccctcttaatcaagatcttcgatgtctacttctttactgaagcttgta |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15632663 |
tcgacgcatagcctcaaataactccctctcatgctctcctcgtcctcgacaccctcttaatcaagatcttcgatgtctacttctttactggagcttgta |
15632565 |
T |
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