View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2161_high_5 (Length: 214)
Name: NF2161_high_5
Description: NF2161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2161_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 7076762 - 7076620
Alignment:
| Q |
1 |
tacatattttactagtaccatttttaaaatataataatatgttt-ctcaaacaaaaacgtataatgacaccaaaaagacaaacattaaggacggtacaat |
99 |
Q |
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| T |
7076762 |
tacatattttactagtaccatttttaaaatataataatatgttttctcaaacaaaaacgtataatgacaccaaaaagacaaacattaaggacggtacaat |
7076663 |
T |
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| Q |
100 |
gttgtgtggcctttatgttttaagagaaatgatagttgaacaa |
142 |
Q |
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| T |
7076662 |
gttgtgtggcctttatgttttaagagaaatgatatttgaacaa |
7076620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 7076397 - 7076446
Alignment:
| Q |
95 |
acaatgttgtgtggcctttatgttttaagagaaatgatagttgaacaacc |
144 |
Q |
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| T |
7076397 |
acaatgttgtgtgacctttatgttttaagagaaatgatatttgaacaacc |
7076446 |
T |
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