View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2161_low_4 (Length: 239)

Name: NF2161_low_4
Description: NF2161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2161_low_4
NF2161_low_4
[»] chr6 (2 HSPs)
chr6 (6-165)||(11626793-11626951)
chr6 (185-232)||(11627026-11627073)
[»] chr4 (4 HSPs)
chr4 (24-153)||(39142385-39142514)
chr4 (38-105)||(51874773-51874840)
chr4 (16-132)||(42403447-42403563)
chr4 (72-158)||(21520755-21520840)
[»] chr1 (1 HSPs)
chr1 (24-106)||(31348734-31348813)
[»] chr2 (1 HSPs)
chr2 (20-100)||(36031042-36031122)
[»] chr7 (1 HSPs)
chr7 (19-81)||(47819320-47819381)
[»] chr8 (1 HSPs)
chr8 (79-108)||(30610277-30610306)
[»] chr3 (2 HSPs)
chr3 (18-94)||(48079781-48079857)
chr3 (117-165)||(54254079-54254127)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 11626793 - 11626951
Alignment:
Q  6 tataaaaacgtctatcaatttagtccttgctgttaagatgttagagacttaattgacggatatttatatactttaaagattaaattgatggatttcatat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  11626793 tataaaaacgtctatcaatttagtccttgctgttaagatgttagagactaaattgacagatatttatatactttaaagattatatttatggatttcatat 11626892  T
Q  106 attgtaggggatacttattatgtttataaattttaggaactaaattgaagagagagtgat 165  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11626893 attgtaggggatacttattatg-ttataaattttaggaactaaattgaagagagagtgat 11626951  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 11627026 - 11627073
Alignment:
Q  185 atttgtgattcgtttcttcttggtgttcatgacagacgatagtattga 232  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  11627026 atttgtgattagttgcttctcggtgttcatgacagacgatagtattga 11627073  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 39142385 - 39142514
Alignment:
Q  24 tttagtccttgctgttaagatgttagagacttaattgacggatatttatatactttaaagattaaattgatggatttcatatattgtaggggatacttat 123  Q
    |||||||| |||| |||||||| ||| |||  |  |||| ||| |||||||||||||  ||||||||||| |||||||||||  | |||||  ||||  |    
T  39142385 tttagtccctgctattaagatgctagggaccaacatgactgatttttatatactttagggattaaattgacggatttcatatgctttagggactactact 39142484  T
Q  124 tatgtttataaattttaggaactaaattga 153  Q
    ||| |||||| |||||||| ||||||||||    
T  39142485 tatatttatagattttagggactaaattga 39142514  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 51874840 - 51874773
Alignment:
Q  38 ttaagatgttagagacttaattgacggatatttatatactttaaagattaaattgatggatttcatat 105  Q
    ||||||||||||||||| |||||| | || || ||||||||||  || ||||||||||||||||||||    
T  51874840 ttaagatgttagagactaaattgatgaattttcatatactttagtgactaaattgatggatttcatat 51874773  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 42403447 - 42403563
Alignment:
Q  16 tctatcaatttagtccttgctgttaagatgttagagacttaattgacggatatttatatactttaaagattaaattgatggatttcatatattgtagggg 115  Q
    ||||||||||||||| ||| | |||||||||||  || | ||||||||| | || ||||| |||||  | ||||||||  |||||||| || | |||||     
T  42403447 tctatcaatttagtctttgttattaagatgttatggaataaattgacggtttttcatataatttaagcactaaattgacagatttcatttactttaggga 42403546  T
Q  116 atacttattatgtttat 132  Q
    ||||||||||| |||||    
T  42403547 atacttattatatttat 42403563  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 21520755 - 21520840
Alignment:
Q  72 tatactttaaagattaaattgatggatttcatatattgtaggggatacttattatgtttataaattttaggaactaaattgaagaga 158  Q
    |||||||||| ||||||||||| | |||||||||| | |||||  ||||||||||  ||||| | |||| ||||||||||| |||||    
T  21520755 tatactttaatgattaaattgacgaatttcatataatttagggattacttattat-attatataatttatgaactaaattggagaga 21520840  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 31348734 - 31348813
Alignment:
Q  24 tttagtccttgctgttaagatgttagagacttaattgacggatatttatatactttaaagattaaattgatggatttcatata 106  Q
    |||||||| |||| |||||||||||||||   |||   | |||||||||||||||| ||||||||||||| ||||||||||||    
T  31348734 tttagtccatgctattaagatgttagagatcaaat---cagatatttatatactttcaagattaaattgacggatttcatata 31348813  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 36031122 - 36031042
Alignment:
Q  20 tcaatttagtccttgctgttaagatgttagagacttaattgacggatatttatatactttaaagattaaattgatggattt 100  Q
    |||||||||||| |||| ||||||||||||  ||| ||||||| | | || ||||||||||  || |||||||||||||||    
T  36031122 tcaatttagtccatgctattaagatgttaggaactaaattgactgtttttcatatactttagggactaaattgatggattt 36031042  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 47819381 - 47819320
Alignment:
Q  19 atcaatttagtccttgctgttaagatgttagagacttaattgacggatatttatatactttaa 81  Q
    |||||| || |||||||| ||||||||||||||||| ||||||| ||| || |||||||||||    
T  47819381 atcaatctaatccttgctattaagatgttagagactaaattgaccgat-ttgatatactttaa 47819320  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 108
Target Start/End: Complemental strand, 30610306 - 30610277
Alignment:
Q  79 taaagattaaattgatggatttcatatatt 108  Q
    ||||||||||||||||||||||||||||||    
T  30610306 taaagattaaattgatggatttcatatatt 30610277  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 48079781 - 48079857
Alignment:
Q  18 tatcaatttagtccttgctgttaagatgttagagacttaattgacggatatttatatactttaaagattaaattgat 94  Q
    ||||||||||||| ||||| |||| |||||| ||||| |||||| |  | ||||| |||||| |||| |||||||||    
T  48079781 tatcaatttagtctttgctattaaaatgttacagactaaattgatgcttttttatgtactttgaagactaaattgat 48079857  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 54254079 - 54254127
Alignment:
Q  117 tacttattatgtttataaattttaggaactaaattgaagagagagtgat 165  Q
    |||||||||| |||||| | |||||| ||||||||| ||||||||||||    
T  54254079 tacttattatatttatacactttagggactaaattggagagagagtgat 54254127  T

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