View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_high_10 (Length: 414)
Name: NF21620_high_10
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 40442482 - 40442098
Alignment:
| Q |
19 |
gaacaacagatactaacagaaaagcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctcatttgaaaaattagcaa |
118 |
Q |
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| T |
40442482 |
gaacaacagatactaacagaaaagcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctcatttgaaaaattagcaa |
40442383 |
T |
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| Q |
119 |
gtctatatagatattgttttcatggcttaggataagaggaacaatttcaatgaacatgtatggacatagaaaagtaatcagtgcctcaatctcaaggatg |
218 |
Q |
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| T |
40442382 |
gtctatatagatattgttttcatggcttaggataagaggaacaatttcaatgaacatgtatggacatagaaaagtaatcagtgcctcaatcacaaggatg |
40442283 |
T |
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| Q |
219 |
tccaaaatattgatcaagttggtaaaagattgtgtggttgtgttgtacctacagattccagggataagagttaagacaagtggattccacttttagtttc |
318 |
Q |
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| T |
40442282 |
tccaaaatattgatcaagttggtaaaagattgtgtggttgtgttgtgcctacagattccagggataagagttaagacaagtggattccacttttagtttc |
40442183 |
T |
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| Q |
319 |
tatcatactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtat |
403 |
Q |
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| T |
40442182 |
tatcatactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtat |
40442098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 13063631 - 13063691
Alignment:
| Q |
42 |
gcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctca |
102 |
Q |
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| T |
13063631 |
gcaataccctcaagcattggcatttggtgtttcaggaattagaagccaagctatcatctca |
13063691 |
T |
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