View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21620_high_11 (Length: 398)

Name: NF21620_high_11
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21620_high_11
NF21620_high_11
[»] chr8 (10 HSPs)
chr8 (51-231)||(12190742-12190919)
chr8 (51-231)||(12435170-12435347)
chr8 (251-397)||(12178875-12179021)
chr8 (251-397)||(12190570-12190716)
chr8 (251-397)||(12423303-12423449)
chr8 (251-397)||(12434998-12435144)
chr8 (80-231)||(12179050-12179191)
chr8 (80-231)||(12423478-12423619)
chr8 (15-51)||(12190945-12190981)
chr8 (15-51)||(12435373-12435409)
[»] chr5 (1 HSPs)
chr5 (253-311)||(16473605-16473663)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 12190919 - 12190742
Alignment:
Q  51 gatcccataggggagatgtgataggtctgaaaaagaaaaagctattcaacattaactttaaaaaagaaagcgtgttgttaccaatatcataaatcatgat 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  12190919 gatcccataggggagatgtgataggtctgaaaaagaaaaagctattcaacattaactcgaaaaaagaaagcgtgttgttaccaatatcataaatcatgat 12190820  T
Q  151 ataaaagttcatgataataatgttattgtaggagcgtgtatcttccacaaccaaagcataaacattcaaagatagctatgg 231  Q
    ||||||||||| |   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  12190819 ataaaagttcaag---ataatgttattgtaggagtgtgtatcttccacaaccaaagcataaacattcaaagatggctatgg 12190742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 12435347 - 12435170
Alignment:
Q  51 gatcccataggggagatgtgataggtctgaaaaagaaaaagctattcaacattaactttaaaaaagaaagcgtgttgttaccaatatcataaatcatgat 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  12435347 gatcccataggggagatgtgataggtctgaaaaagaaaaagctattcaacattaactcgaaaaaagaaagcgtgttgttaccaatatcataaatcatgat 12435248  T
Q  151 ataaaagttcatgataataatgttattgtaggagcgtgtatcttccacaaccaaagcataaacattcaaagatagctatgg 231  Q
    ||||||||||| |   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  12435247 ataaaagttcaag---ataatgttattgtaggagtgtgtatcttccacaaccaaagcataaacattcaaagatggctatgg 12435170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 251 - 397
Target Start/End: Complemental strand, 12179021 - 12178875
Alignment:
Q  251 caaaaaacacgatgtttttatcagttttagaggggaagatactcgcaccaattttacaagctttcttcatgaagctttgcgtagaaaccacatcgaaacc 350  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  12179021 caaaaaacacgatgtttttatcagttttagaggggaggatactcgcaccaattttacaagctttcttcatgcggctttgtgtaaaaaccacatcgaaacc 12178922  T
Q  351 tacatagactataggatcgaaaagggagaagaggtttgggaagaact 397  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  12178921 tacatagactatagaatcgaaaaaggagaagaggtttgggaagaact 12178875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 251 - 397
Target Start/End: Complemental strand, 12190716 - 12190570
Alignment:
Q  251 caaaaaacacgatgtttttatcagttttagaggggaagatactcgcaccaattttacaagctttcttcatgaagctttgcgtagaaaccacatcgaaacc 350  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  12190716 caaaaaacacgatgtttttatcagttttagaggggaggatactcgcaccaattttacaagctttcttcatgcggctttgtgtaaaaaccacatcgaaacc 12190617  T
Q  351 tacatagactataggatcgaaaagggagaagaggtttgggaagaact 397  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  12190616 tacatagactatagaatcgaaaaaggagaagaggtttgggaagaact 12190570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 251 - 397
Target Start/End: Complemental strand, 12423449 - 12423303
Alignment:
Q  251 caaaaaacacgatgtttttatcagttttagaggggaagatactcgcaccaattttacaagctttcttcatgaagctttgcgtagaaaccacatcgaaacc 350  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  12423449 caaaaaacacgatgtttttatcagttttagaggggaggatactcgcaccaattttacaagctttcttcatgcggctttgtgtaaaaaccacatcgaaacc 12423350  T
Q  351 tacatagactataggatcgaaaagggagaagaggtttgggaagaact 397  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  12423349 tacatagactatagaatcgaaaaaggagaagaggtttgggaagaact 12423303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 251 - 397
Target Start/End: Complemental strand, 12435144 - 12434998
Alignment:
Q  251 caaaaaacacgatgtttttatcagttttagaggggaagatactcgcaccaattttacaagctttcttcatgaagctttgcgtagaaaccacatcgaaacc 350  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||    
T  12435144 caaaaaacacgatgtttttatcagttttagaggggaggatactcgcaccaattttacaagctttcttcatgcggctttgtgtaaaaaccacatcgaaacc 12435045  T
Q  351 tacatagactataggatcgaaaagggagaagaggtttgggaagaact 397  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  12435044 tacatagactatagaatcgaaaaaggagaagaggtttgggaagaact 12434998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 12179191 - 12179050
Alignment:
Q  80 aaaaagaaaaagctattcaacattaactttaaaaaagaaagcgtgttgttaccaatatcataaatcatgatataaaagttcatgataataatgttattgt 179  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||      ||||||||||| || |||   ||||||||    
T  12179191 aaaaaaaaaaaactattcaacattaacttgaaaaa-gaaagcgtgatgttaccaatatcataaat------ataaaagttcaagacaat---gttattgt 12179102  T
Q  180 aggagcgtgtatcttccacaaccaaagcataaacattcaaagatagctatgg 231  Q
    || ||  ||||||||||||||||||||||||||||||||||||||| |||||    
T  12179101 agtagtctgtatcttccacaaccaaagcataaacattcaaagatagttatgg 12179050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 12423619 - 12423478
Alignment:
Q  80 aaaaagaaaaagctattcaacattaactttaaaaaagaaagcgtgttgttaccaatatcataaatcatgatataaaagttcatgataataatgttattgt 179  Q
    ||||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||      ||||||||||| || |||   ||||||||    
T  12423619 aaaaaaaaaaaactattcaacattaacttgaaaaa-gaaagcgtgatgttaccaatatcataaat------ataaaagttcaagacaat---gttattgt 12423530  T
Q  180 aggagcgtgtatcttccacaaccaaagcataaacattcaaagatagctatgg 231  Q
    || ||  ||||||||||||||||||||||||||||||||||||||| |||||    
T  12423529 agtagtctgtatcttccacaaccaaagcataaacattcaaagatagttatgg 12423478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 12190981 - 12190945
Alignment:
Q  15 aaggacaagtaaaagtgagacaaagggtaggggtggg 51  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  12190981 aaggacaagtaaaagtaagacaaagggtagtggtggg 12190945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 12435409 - 12435373
Alignment:
Q  15 aaggacaagtaaaagtgagacaaagggtaggggtggg 51  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  12435409 aaggacaagtaaaagtaagacaaagggtagtggtggg 12435373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 16473663 - 16473605
Alignment:
Q  253 aaaaacacgatgtttttatcagttttagaggggaagatactcgcaccaattttacaagc 311  Q
    |||| ||||| |||||||||||||||||||| || |||||||||| |||||| ||||||    
T  16473663 aaaagcacgaagtttttatcagttttagaggtgaggatactcgcaacaatttcacaagc 16473605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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