View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_high_15 (Length: 367)
Name: NF21620_high_15
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 4 - 363
Target Start/End: Original strand, 43881219 - 43881578
Alignment:
| Q |
4 |
aacttctgcaaacgtctcttggtaaatcaatgttcatctgcttaacttttggtttagaatctctttcaagcttctactagattttgatttgaatattgtc |
103 |
Q |
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| T |
43881219 |
aacttctgcaaacgtctcttggtaaatcaatgttcatctgcttaactttcggtttagaatctctttcaagcttctactagattttgattggaatattgtc |
43881318 |
T |
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| Q |
104 |
tttgattttactgcacaggcggtcaagcaaagactctcatgtttgtccagattaactcggacgtcagttcgtattctgaaactttgagtactttaaagtt |
203 |
Q |
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| T |
43881319 |
tttgattttactgcacaggcggtcaagcaaagactctcatgtttgtccagattaactcggacgtcagttcgtattctgaaactttgagtactttaaagtt |
43881418 |
T |
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| Q |
204 |
tgctgagagagtttcctcagttgaactagtagctgcacgaaataacaaggagacaagagaattatctgaacaggtaatttaccttgttcatgtaaattga |
303 |
Q |
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| T |
43881419 |
tgctgagagagtttcctcagttgaactaggagctgcacgaaataacaaggagacgagagaattatctgaacaggtaatttaccttgttcatgtaaattga |
43881518 |
T |
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| Q |
304 |
atacgtcggtgtggttatgcggtgtgctttccttttgtttcatgtactctgacaagtatt |
363 |
Q |
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| T |
43881519 |
atacgtcggtgtggttatgcggtgtgcttttcttttgtttcatgtactctgacaagtatt |
43881578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 31645653 - 31645559
Alignment:
| Q |
124 |
ggtcaagcaaagactctcatgtttgtccagattaactcggacgtcagttcgtattctgaaactttgagtactttaaagtttgctgagagagtttc |
218 |
Q |
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| T |
31645653 |
ggtcatgcaaagacactcatgttagtccaaattaattcagacataaagtcttactctgaatctttgagtactttaaagtttgctgaaagggtttc |
31645559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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