View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21620_high_2 (Length: 579)
Name: NF21620_high_2
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 295 - 574
Target Start/End: Original strand, 30215397 - 30215672
Alignment:
| Q |
295 |
aaaaacatatctaattttgctataaatgatcataagtagtattaatttaatttcccttattatcatgctatattgttgcgaaaagttctcaattatgatg |
394 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30215397 |
aaaaacatatccaattttgctataaatgaacata----gtattaatttaatttcccttattatcatgctatattgttgcgaaaagttctcaattatgatg |
30215492 |
T |
|
| Q |
395 |
atgaatattcctccaatatttttgatccatcaattaacaaacgacatgcaacccaaccttaacctagtcatcaatcatcatacaaaaataatcccaaatc |
494 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30215493 |
atgaatatttctccaatatttttcattcatcaattaacaaacgacatgcaacccaaccttaacctagtcatcaatcatcatacaaaaataatccgaaatc |
30215592 |
T |
|
| Q |
495 |
tcaatcgtgtaatttctccaaacacgttacaaacaatcaacccaaacacgtgggtcccttatgtcttcttctcactcgac |
574 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
30215593 |
tcaaccgtgtaatttctccaaacacgttacaaacaatcaacccaaacacgtgggtcccttatgtcttctacgcactcgac |
30215672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 30215037 - 30215315
Alignment:
| Q |
1 |
tctcatccatccttcaaaaagtttttgacattatatcgactctttgtaatatttttatcgnnnnnnnnn--gcacattttgtgcttaatataattgtcaa |
98 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
30215037 |
tctcatccatccttcaaatagtttttgacattgtatcgactctttgtaatatttttatcgttttttttgttgcacattttgt------tataattgtcaa |
30215130 |
T |
|
| Q |
99 |
taataattatttgcattaaaaatattggtaggtatttttcactcctttcaatatttttggcaaaatccgccaccaatcatatgaatatttttgaaagaga |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30215131 |
taataattatttgcattaaaaaaattggttggtatttttcactcctttcaatatttttggcaaaatccgccaccaatcatatgaatatttttcaaagaga |
30215230 |
T |
|
| Q |
199 |
tcacctacaaaagttcttgnnnnnnnnnnnnncttcaaattagatgaaaaaagcaaagaatttgaacctaaaatgtactcatttt |
283 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30215231 |
tcacctataaaagttcttgtttttggttttttcttcaaattagatgaaaaaagcaaagaatttgaacctaaaatgtactcatttt |
30215315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University