View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_high_20 (Length: 310)
Name: NF21620_high_20
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 37 - 277
Target Start/End: Original strand, 4599070 - 4599310
Alignment:
| Q |
37 |
agaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggaca |
136 |
Q |
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| T |
4599070 |
agaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggaca |
4599169 |
T |
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| Q |
137 |
aacatataaccaagtcgcagcctgcacatattgtttagttaagagtactggtacaacttaatttgcgagtacaccatagaagtttccatcaaataatata |
236 |
Q |
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| T |
4599170 |
aacatataaccaagttgcagcctgcacatattgtttagttaagagtactggtacaacttaatttgcgagtacatcatagaagtttccatcaaataatata |
4599269 |
T |
|
| Q |
237 |
taacaataatctcaagagagtcctactcacccatgctccaa |
277 |
Q |
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| T |
4599270 |
taacaataattgcaagagagtcttactcacccttggtccaa |
4599310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 4623497 - 4623637
Alignment:
| Q |
37 |
agaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggaca |
136 |
Q |
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| T |
4623497 |
agaatgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaataccctttggaca |
4623596 |
T |
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| Q |
137 |
aacatataaccaagtcgcagcctgcacatattgtttagtta |
177 |
Q |
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| T |
4623597 |
aacatataaccaagttgcagcctgcacatattgtttagtta |
4623637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 4623649 - 4623724
Alignment:
| Q |
224 |
atcaaataatatataacaataatctcaagagagtcctactcacccatgctccaatgtatgtcccatctttattctt |
299 |
Q |
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| T |
4623649 |
atcaaataagatgtaacaataatctcaagagagtcttactcacccatgctccaatgtatgtcccatctttattctt |
4623724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 25016383 - 25016481
Alignment:
| Q |
52 |
tattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaag |
150 |
Q |
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| T |
25016383 |
tattaccattttctgttatgtaaatcaatggattattatactttgtctttgtgtgcaacagtagttcctgaatcccccttggataaacaaatagccaag |
25016481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 25037649 - 25037744
Alignment:
| Q |
55 |
taccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaag |
150 |
Q |
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| T |
25037649 |
taccattttcggttatgtaaatcacagggttgttatactttgtctttgtgtacaacagtagttcttgaatcccccttggataaacaaatagccaag |
25037744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 18805481 - 18805377
Alignment:
| Q |
45 |
atataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatata |
144 |
Q |
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|||||| |||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||||| |
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| T |
18805481 |
atataagtattaccattttctgttatgtaaataacaggattgttatactttttctttatgtacaacagtagctcttgaatcccctttggataaacatata |
18805382 |
T |
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| Q |
145 |
accaa |
149 |
Q |
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|||| |
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| T |
18805381 |
gccaa |
18805377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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