View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21620_high_21 (Length: 283)

Name: NF21620_high_21
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21620_high_21
NF21620_high_21
[»] chr1 (3 HSPs)
chr1 (1-262)||(31770675-31770936)
chr1 (178-235)||(14184882-14184939)
chr1 (210-262)||(7607896-7607948)
[»] chr4 (1 HSPs)
chr4 (1-262)||(41810379-41810640)
[»] chr3 (3 HSPs)
chr3 (178-262)||(52130977-52131061)
chr3 (210-262)||(53689441-53689493)
chr3 (208-262)||(52311470-52311524)
[»] chr7 (3 HSPs)
chr7 (185-254)||(37362394-37362464)
chr7 (214-262)||(1971313-1971361)
chr7 (220-256)||(7841472-7841508)
[»] chr5 (1 HSPs)
chr5 (1-52)||(16253106-16253157)
[»] chr8 (1 HSPs)
chr8 (205-259)||(19962262-19962318)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 31770675 - 31770936
Alignment:
Q  1 cggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnnnnnnnnnnnnnncaacatcaggaagatatacagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||    
T  31770675 cggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaaaaccaaaaaaacaacatcaggaagatatacagt 31770774  T
Q  101 acagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgaagatgtataatc 200  Q
    |||||||| ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31770775 acagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgaagatgtataatc 31770874  T
Q  201 aaaagtgacagagggagaggaagagggaagcatggggcactgtagagtttgcatgggtattg 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31770875 aaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattg 31770936  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 14184939 - 14184882
Alignment:
Q  178 ttctcatttgaagatgtataatcaaaagtgacagagggagaggaagagggaagcatgg 235  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14184939 ttctaatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatgg 14184882  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 7607896 - 7607948
Alignment:
Q  210 agagggagaggaagagggaagcatggggcactgtagagtttgcatgggtattg 262  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7607896 agagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattg 7607948  T

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Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 41810640 - 41810379
Alignment:
Q  1 cggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnnnnnnnnnnnnnncaacatcaggaagatatacagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||    
T  41810640 cggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaaaaccaaaaaaacaacatcaggaagatatacagt 41810541  T
Q  101 acagaaataacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgaagatgtataatc 200  Q
    |||||||| ||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41810540 acagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtagtaaagcaatatatctacaatacttctcatttgaagatgtataatc 41810441  T
Q  201 aaaagtgacagagggagaggaagagggaagcatggggcactgtagagtttgcatgggtattg 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41810440 aaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatgggtattg 41810379  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 52131061 - 52130977
Alignment:
Q  178 ttctcatttgaagatgtataatcaaaagtgacagagggagaggaagagggaagcatggggcactgtagagtttgcatgggtattg 262  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  52131061 ttctcatttgatgatgtataatcaaaagtgacagagggagaagaagagggaagcatggggcactgtagagtttgcatcggtattg 52130977  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 53689493 - 53689441
Alignment:
Q  210 agagggagaggaagagggaagcatggggcactgtagagtttgcatgggtattg 262  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  53689493 agaggaagaagaagagggaagcatggggctctgtagagtttgcatcggtattg 53689441  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 52311470 - 52311524
Alignment:
Q  208 acagagggagaggaagagggaagcatggggcactgtagagtttgcatgggtattg 262  Q
    ||||||||||| |||||||| | |||||||| ||||||||||||||| |||||||    
T  52311470 acagagggagaagaagagggcaacatggggctctgtagagtttgcatcggtattg 52311524  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 37362394 - 37362464
Alignment:
Q  185 ttgaagatgtataatcaaaa-gtgacagagggagaggaagagggaagcatggggcactgtagagtttgcat 254  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  37362394 ttgaagatgtttaatcaaaatgtgacagagggagaagaagagggaagcatggggctctgtagagtttgcat 37362464  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 1971361 - 1971313
Alignment:
Q  214 ggagaggaagagggaagcatggggcactgtagagtttgcatgggtattg 262  Q
    ||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  1971361 ggagaagaagagggaagcatggggctctgtagagtttgcattggtattg 1971313  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 7841508 - 7841472
Alignment:
Q  220 gaagagggaagcatggggcactgtagagtttgcatgg 256  Q
    ||||||||||||||||||  |||||||||||||||||    
T  7841508 gaagagggaagcatggggttctgtagagtttgcatgg 7841472  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16253106 - 16253157
Alignment:
Q  1 cggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaag 52  Q
    ||||||||| |||||||  ||||||||||||||||||||||||| |||||||    
T  16253106 cggaaaagtgcaatgcggtgaagaaatggatggagcgaaccttgaatcgaag 16253157  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 19962318 - 19962262
Alignment:
Q  205 gtgacagagggagaggaagagggaagc--atggggcactgtagagtttgcatgggta 259  Q
    ||||| |||||||| ||||||||||||  ||||||| ||||||||||||||| ||||    
T  19962318 gtgacggagggagaagaagagggaagcatatggggctctgtagagtttgcatcggta 19962262  T

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