View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21620_high_23 (Length: 265)

Name: NF21620_high_23
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21620_high_23
NF21620_high_23
[»] chr7 (5 HSPs)
chr7 (1-265)||(35799799-35800063)
chr7 (33-104)||(35786563-35786635)
chr7 (28-99)||(35789987-35790061)
chr7 (14-78)||(35756262-35756326)
chr7 (33-104)||(35761635-35761707)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 35799799 - 35800063
Alignment:
Q  1 aggcgattttaagtctaaccaataaacatctccttgaacatggccaaaatcaagacattttcagatcaaatataaccataatcaaaacagattcatgtac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35799799 aggcgattttaagtctaaccaataaacatctccttgaacatggccaaaatcaagacattttcagatcaaatataaccataatcaaaacagattcatgtac 35799898  T
Q  101 aaaaagatacacaatttagctgcatacaagaataagcaatttaatggcatagggttttcttaacaacgtttcaccaagagatgatttctagatattcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35799899 aaaaagatacacaatttagctgcatacaagaataagcaatttaatggcatagggttttcttaacaacgtttcaccaagagatgatttctagatattcaat 35799998  T
Q  201 tcgaaatagcaaaccatagcccgcatgaattcaaagcacaacacagacaaaaattattacagaac 265  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35799999 tcgaaatagcaaaccgtagaccgcatgaattcaaagcacaacacagacaaaaattattacagaac 35800063  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 35786563 - 35786635
Alignment:
Q  33 cttgaacatggccaaaatcaagac-attttcagatcaaatataaccataatcaaaacagattcatgtacaaaa 104  Q
    ||||||||| |||||||||||||| |||||||||||||||  ||| | |||||||| || |||||||||||||    
T  35786563 cttgaacattgccaaaatcaagaccattttcagatcaaattaaacaaaaatcaaaatagtttcatgtacaaaa 35786635  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 35789987 - 35790061
Alignment:
Q  28 atctccttgaacatggccaaaatcaagacattttcagatc-aaatata--accataatcaaaacagattcatgta 99  Q
    |||| ||||||||| ||||||||||||||||| | ||||| |||||||  |||||||||||||||| ||||||||    
T  35789987 atctacttgaacatagccaaaatcaagacattataagatcaaaatataacaccataatcaaaacagtttcatgta 35790061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 35756262 - 35756326
Alignment:
Q  14 tctaaccaataaacatctccttgaacatggccaaaatcaagacattttcagatcaaatataacca 78  Q
    ||||||||||| | | || ||||||||| ||||||||||| | |||||| |||||||| ||||||    
T  35756262 tctaaccaatagatacctacttgaacatcgccaaaatcaatatattttctgatcaaatgtaacca 35756326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 35761635 - 35761707
Alignment:
Q  33 cttgaacatggccaaaatcaaga-cattttcagatcaaatataaccataatcaaaacagattcatgtacaaaa 104  Q
    ||||||||| ||||||||||||| |||||||| ||||||| |||||| | | ||||  | |||||||||||||    
T  35761635 cttgaacattgccaaaatcaagaccattttcatatcaaatttaaccaaacttaaaatggtttcatgtacaaaa 35761707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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