View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_high_27 (Length: 247)
Name: NF21620_high_27
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 23915729 - 23915925
Alignment:
| Q |
33 |
atatatatacacttaattgtaaaatttatgattattgtattagtattagtcatgagttcattttgattggagttcaagctaatccattgaacttcatgta |
132 |
Q |
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| T |
23915729 |
atatatatacacttaattgtaagatttatgattcttgtattagtattagtcatgagttcattttgattggagttcaagctaatccattgaactccatgta |
23915828 |
T |
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| Q |
133 |
accacattgtattcaagacatatagaagaagcttaatatacattacctaaatttacttaagtattgtttatttac-ataaaacatggatacggacac |
228 |
Q |
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| T |
23915829 |
atcacattgtattcaagacatatagaagaagcttaatatacattacctaaatttacttaagtattttttatttactataaaacaccgatacggacac |
23915925 |
T |
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