View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21620_high_3 (Length: 570)
Name: NF21620_high_3
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_high_3 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] scaffold0548 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 31258148 - 31258718
Alignment:
| Q |
1 |
ataatgagtgaaaggaagagaaattgagatgaagtgttcatcttatcttaaaatgattaacaaggaaaagagaagtgcaggtatatatgtctataattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31258148 |
ataatgagtgaaaggaagagaaattgagatgaagtgttcatcttatcttaaaatgattaacaaggaaaagagaagtgcaggtatatatgtctataattta |
31258247 |
T |
|
| Q |
101 |
taggtagagagtctggacatatatacagcctatttggaatttaagatgcaaggaaagtccttaatgcatgtaaatgcaattatgagagtaaatcatcatt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31258248 |
taggtagagagtctgaacatatatacagcctatttggaatttaagatgcaaggaaagtccttaatgcatgtaaatgcaattatgagagtaaatcatcatt |
31258347 |
T |
|
| Q |
201 |
ttagtcaatgaaattgtaggattgtgtaaatttattacttaaaatattaacatgatttgaatgagaatttcattggtaaaatttcacagcagaaactaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31258348 |
ttagtcaatgaaattgtaggattgtgtaaatttattacttaaaatattaacatgatttgaatgagaatttcattggtaaaatttcacagcagaaactaaa |
31258447 |
T |
|
| Q |
301 |
atatgacagcaccaataactttataaagtaaattgatgaatcatcatccacg-nnnnnnncatattaaagtcatgtatttgacccaatgatgtttaacta |
399 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31258448 |
atatgacagcaccaataactttgtaaagtaaattgatgaatcatcatccacgaaaaaaaacatattaaagtcatgtatttgacccaatgatgtttaacta |
31258547 |
T |
|
| Q |
400 |
acattgatgattgacacaatgatgagacatatctttaaagatagaggagaagactcagtgaaagcatgtataatactagtcaacattcagacaattctgc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31258548 |
acattgatgattgacacaatgatgagacatatctttaaagatagaggagaagactcagtgaaagcatgtataatactagtcaacattcagacaattctgc |
31258647 |
T |
|
| Q |
500 |
atgttctatagatgcatgcatgtcccattcatgaattattatcacaaacaaacaaacgtcataatattcaa |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31258648 |
atgttctatagatgcatgcatgtcccattcatgaattattatcacaaacaaacaaacgtcataatattcaa |
31258718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 31283913 - 31283955
Alignment:
| Q |
3 |
aatgagtgaaaggaagagaaattgagatgaagtgttcatctta |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31283913 |
aatgagtgaaaggaagagaaattgagatgaagtgttcatctta |
31283955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 31362902 - 31362985
Alignment:
| Q |
3 |
aatgagtgaaaggaagagaaattgagatgaagtgttcatcttatcttaaaatgattaacaaggaaaagagaagtgcaggtatat |
86 |
Q |
| |
|
||||||||||||||||| | |||||| || ||| |||||||||||||||| |||||||||||| |||||||| ||| ||||| |
|
|
| T |
31362902 |
aatgagtgaaaggaagaaacattgagtggatgtggccatcttatcttaaaattattaacaaggaagagagaagttcagatatat |
31362985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 31416165 - 31416123
Alignment:
| Q |
3 |
aatgagtgaaaggaagagaaattgagatgaagtgttcatctta |
45 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31416165 |
aatgagtgaaaggaagagaaattgagaggaagtgttcatctta |
31416123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 31284465 - 31284524
Alignment:
| Q |
161 |
ttaatgcatgtaaatgcaattatgagagtaaatcatcattttagtcaatgaaattgtagg |
220 |
Q |
| |
|
|||| |||| |||| ||| ||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
31284465 |
ttaacgcatctaaacgcagttatgagagtaaatcatcaatttagtccctgaaattgtagg |
31284524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 9442 - 9372
Alignment:
| Q |
150 |
aaggaaagtccttaatgcatgtaaatgcaattatgagagtaaatcatcattttagtcaatgaaattgtagg |
220 |
Q |
| |
|
||||||||| |||| | |||||||| |||||||||||||||||||||| || | || |||||||||||| |
|
|
| T |
9442 |
aaggaaagttcttactacatgtaaactcaattatgagagtaaatcatcaattgattccctgaaattgtagg |
9372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 15103561 - 15103631
Alignment:
| Q |
150 |
aaggaaagtccttaatgcatgtaaatgcaattatgagagtaaatcatcattttagtcaatgaaattgtagg |
220 |
Q |
| |
|
||||||||| |||| | |||||||| |||||||||||||||||||||| || | || |||||||||||| |
|
|
| T |
15103561 |
aaggaaagttcttactacatgtaaactcaattatgagagtaaatcatcaattgattccctgaaattgtagg |
15103631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University