View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21620_high_7 (Length: 466)

Name: NF21620_high_7
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21620_high_7
NF21620_high_7
[»] chr5 (5 HSPs)
chr5 (330-448)||(18552691-18552809)
chr5 (53-175)||(18552297-18552424)
chr5 (84-162)||(19803974-19804052)
chr5 (111-162)||(1583728-1583779)
chr5 (84-150)||(17202192-17202258)
[»] chr1 (7 HSPs)
chr1 (338-433)||(9928427-9928522)
chr1 (330-433)||(35150651-35150754)
chr1 (330-389)||(26617752-26617811)
chr1 (84-150)||(2655951-2656017)
chr1 (84-162)||(10101512-10101590)
chr1 (104-162)||(23913472-23913530)
chr1 (84-150)||(32769211-32769277)
[»] chr4 (7 HSPs)
chr4 (51-150)||(33889816-33889921)
chr4 (85-160)||(24915571-24915646)
chr4 (84-150)||(45666546-45666611)
chr4 (84-151)||(49299647-49299714)
chr4 (358-431)||(3441858-3441931)
chr4 (84-152)||(25360907-25360975)
chr4 (84-150)||(45635236-45635302)
[»] chr7 (7 HSPs)
chr7 (84-150)||(4678618-4678684)
chr7 (329-411)||(12077809-12077891)
chr7 (84-150)||(39617738-39617804)
chr7 (91-154)||(27063550-27063613)
chr7 (84-150)||(2271667-2271733)
chr7 (84-174)||(1752417-1752503)
chr7 (330-434)||(9349041-9349144)
[»] chr6 (3 HSPs)
chr6 (86-162)||(31660664-31660740)
chr6 (85-162)||(31658828-31658905)
chr6 (104-164)||(21014007-21014067)
[»] scaffold1327 (1 HSPs)
scaffold1327 (51-150)||(1005-1110)
[»] scaffold0008 (1 HSPs)
scaffold0008 (84-126)||(5055-5097)
[»] chr2 (1 HSPs)
chr2 (84-133)||(7486018-7486067)
[»] chr3 (2 HSPs)
chr3 (102-150)||(2094003-2094051)
chr3 (334-422)||(31609189-31609277)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 330 - 448
Target Start/End: Original strand, 18552691 - 18552809
Alignment:
Q  330 tattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaa 429  Q
    |||| ||||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  18552691 tattctttggagcatgtggaaacatcgaaaccttaaaatttaggagaatgagaatgagttatgtgcaaatgttgtcgatagagaacgtcatcttatagaa 18552790  T
Q  430 gacttaaagtacctccaag 448  Q
    ||||| | |||||||||||    
T  18552791 gacttgatgtacctccaag 18552809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 18552297 - 18552424
Alignment:
Q  53 ataaaaattattccaacttcacaataaccata------gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaac 146  Q
    ||||||||||||||||||||||||||| || |      |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  18552297 ataaaaattattccaacttcacaataatcaaaatttaagaaaaatttaattt-cctccaactcatttaatcaaagttaagacttgaattatgaattcaac 18552395  T
Q  147 caatactaaattcacaatctgtgacgtat 175  Q
    |||||||||||||||| | ||||||||||    
T  18552396 caatactaaattcacactatgtgacgtat 18552424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 19804052 - 19803974
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 162  Q
    |||||||||||| |||| |||||||| |||||| ||||||||| |||||| ||||  || ||||||| ||| |||||||    
T  19804052 agaaaaatttaactttcttccaactcctttaatcaaagttaaggcttcaactatggcttaaaccaatgctagattcaca 19803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 1583779 - 1583728
Alignment:
Q  111 tttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 162  Q
    |||||| |||||||||||||||| ||||  |||||||||| |||||||||||    
T  1583779 tttaatcaaagttaagacttcaaatatggcttcaaccaatgctaaattcaca 1583728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 17202192 - 17202258
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    ||||||| |||| |||| | |||||  ||||||||||||||||||||||| ||||  ||||||||||    
T  17202192 agaaaaaattaactttctttcaacttctttaattaaagttaagacttcaactatggcttcaaccaat 17202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 9928427 - 9928522
Alignment:
Q  338 ggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaagact 433  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9928427 ggagtttgtggaagcatcgaaaccttaaactttgggaaaatgaaaatgagttatgtgcaaatgttgtcgatagagcacgtcatcttatagaagact 9928522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 330 - 433
Target Start/End: Original strand, 35150651 - 35150754
Alignment:
Q  330 tattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaa 429  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  35150651 tattctttggagtctgtggaagcatcgaaaccttaaactttgggagaatgaaaatgagttgtgtgcaaatgttgtcgatagagcacatcatcttatagaa 35150750  T
Q  430 gact 433  Q
    ||||    
T  35150751 gact 35150754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 26617752 - 26617811
Alignment:
Q  330 tattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagtt 389  Q
    |||| |||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||    
T  26617752 tattctttggagtctatggaagcattgaaaccttaaactttgggagaatgaaaatgagtt 26617811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 2656017 - 2655951
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    |||||||  ||| ||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||||||    
T  2656017 agaaaaaaataactttcctccaactcctttaatcaaaattaaggcttcaactatgacttcaaccaat 2655951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 10101512 - 10101590
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 162  Q
    |||||||||||| |||||| |||||||||| |  |||||||||  ||||| ||||  ||||||| |||||| |||||||    
T  10101512 agaaaaatttaactttccttcaactcattttaccaaagttaagttttcaactatggtttcaaccgatactatattcaca 10101590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 23913530 - 23913472
Alignment:
Q  104 caactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 162  Q
    ||||| ||||||| |||||||||||||||| ||||  ||||||||||| || |||||||    
T  23913530 caacttatttaatcaaagttaagacttcaactatggtttcaaccaatattagattcaca 23913472  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 32769277 - 32769211
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    ||||||| |||| ||||||||||||| |||||| ||| |||||  ||||| ||||| ||||||||||    
T  32769277 agaaaaaattaactttcctccaactcctttaatcaaaattaaggtttcaactatgacttcaaccaat 32769211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 33889921 - 33889816
Alignment:
Q  51 atataaaaattattccaacttcacaataaccata------gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattca 144  Q
    ||||||||||||||||||||||||| ||| || |      |||||| |||| ||||||||||||| |||||| ||| |||||||||||| ||||| ||||    
T  33889921 atataaaaattattccaacttcacattaatcaaaagttaagaaaaaattaactttcctccaactcctttaatcaaaattaagacttcaactatgacttca 33889822  T
Q  145 accaat 150  Q
    ||||||    
T  33889821 accaat 33889816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 24915646 - 24915571
Alignment:
Q  85 gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattca 160  Q
    ||||||||||| ||||||||||||  |||||| ||||||||| |||||| ||||  |||||||||||||| |||||    
T  24915646 gaaaaatttaactttcctccaacttctttaatcaaagttaaggcttcaactatggtttcaaccaatactagattca 24915571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 45666611 - 45666546
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||  ||||||||||    
T  45666611 agaaaaaattaattttc-tccaactcctttaattaaagttaagacttcaactatggcttcaaccaat 45666546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 49299647 - 49299714
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaata 151  Q
    ||||||| ||||  ||| ||||||||||||||||||||||||| |||||| ||||  |||||||||||    
T  49299647 agaaaaaattaaccttcttccaactcatttaattaaagttaaggcttcaactatggcttcaaccaata 49299714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 431
Target Start/End: Original strand, 3441858 - 3441931
Alignment:
Q  358 aaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaaga 431  Q
    ||||||||||||||| ||||||| ||||| |||||||| ||||||||  ||||||| || || || ||||||||    
T  3441858 aaccttaaactttggaagaatgataatgaattatgtgccaatgttgtcaatagagcgcgccaactaatagaaga 3441931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 25360907 - 25360975
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatac 152  Q
    |||||||||||| ||||||||| ||  |||||| ||||||||| |||||| ||||  ||||||||||||    
T  25360907 agaaaaatttaactttcctccagcttctttaatcaaagttaaggcttcaactatggtttcaaccaatac 25360975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 45635236 - 45635302
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    |||||||  ||| ||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||||||    
T  45635236 agaaaaaaataactttcctccaactcctttaatcaaaattaaggcttcaactatgacttcaaccaat 45635302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 4678684 - 4678618
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    ||||||| |||| ||||||||||||| |||||| ||| |||||||||| ||||||| ||||||||||    
T  4678684 agaaaaagttaactttcctccaactcctttaatcaaaattaagacttcgattatgacttcaaccaat 4678618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 411
Target Start/End: Complemental strand, 12077891 - 12077809
Alignment:
Q  329 ttattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgataga 411  Q
    |||||||||||||| | | ||| ||||  |||||||||| |||| |||||||||||||||||  |||||||||||| ||||||    
T  12077891 ttattttttggagtctctagaagcatcataaccttaaacattggaagaatgaaaatgagttaattgcaaatgttgtcgataga 12077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 39617804 - 39617738
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    ||||||| |||| |||| |||||||| |||||||||||||||| |||||| ||||| ||||||||||    
T  39617804 agaaaaaattaactttcttccaactcctttaattaaagttaaggcttcaactatgacttcaaccaat 39617738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 27063550 - 27063613
Alignment:
Q  91 tttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatacta 154  Q
    ||||| ||||||||||||| |||||| ||||||||| |||||| ||||  ||||||||||||||    
T  27063550 tttaactttcctccaactcctttaatcaaagttaaggcttcaactatggtttcaaccaatacta 27063613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 2271667 - 2271733
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    ||||||| |||| |||| |||||||  ||||||||||||||||||||||| ||||| ||||| ||||    
T  2271667 agaaaaaattaactttcttccaacttctttaattaaagttaagacttcaactatgacttcaatcaat 2271733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 1752417 - 1752503
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcacaatctgtgacgta 174  Q
    |||||||||||| |||| ||||||||||||||| |||||||    ||||| | ||| ||||||||||| || ||||||| | |||||||||    
T  1752417 agaaaaatttaactttcttccaactcatttaatcaaagtta----ttcaactgtgatttcaaccaatattagattcacactatgtgacgta 1752503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 434
Target Start/End: Original strand, 9349041 - 9349144
Alignment:
Q  330 tattttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatcttatagaa 429  Q
    |||| |||||||| |  |||||||||  ||||||||||||||| ||| | ||||||  ||||||||||||| |  | ||||| ||||||| |||||||||    
T  9349041 tattctttggagtcttcggaaacatcagaaccttaaactttggaagagttaaaatgcattatgtgcaaatgct-ataatagatcacgtcagcttatagaa 9349139  T
Q  430 gactt 434  Q
    |||||    
T  9349140 gactt 9349144  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 31660740 - 31660664
Alignment:
Q  86 aaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 162  Q
    |||||||||| ||||||||||||  |||||| |||| ||||||||||| ||||  |||||| ||||||| |||||||    
T  31660740 aaaaatttaactttcctccaacttctttaatcaaagctaagacttcaactatggtttcaacaaatactagattcaca 31660664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 31658905 - 31658828
Alignment:
Q  85 gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcaca 162  Q
    ||||||||||| ||| ||| ||||| |||||| |||||||||  ||||| ||||  |||||||||||||| |||||||    
T  31658905 gaaaaatttaacttttctctaactcctttaatcaaagttaaggtttcaactatggtttcaaccaatactagattcaca 31658828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 21014007 - 21014067
Alignment:
Q  104 caactcatttaattaaagttaagacttcaattatgaattcaaccaatactaaattcacaat 164  Q
    |||||| |||||| ||| |||||||||||| ||||  ||| |||||||||| |||||||||    
T  21014007 caactcctttaatcaaaattaagacttcaactatggtttccaccaatactagattcacaat 21014067  T

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Target: scaffold1327 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 1110 - 1005
Alignment:
Q  51 atataaaaattattccaacttcacaataaccata------gaaaaatttaattttcctccaactcatttaattaaagttaagacttcaattatgaattca 144  Q
    ||||||||||||||||||||||||| ||  || |      |||||| |||| |||| ||||||||  ||||||||||||||| |||||| ||| | ||||    
T  1110 atataaaaattattccaacttcacattattcaaaagttaggaaaaaattaactttcttccaactccattaattaaagttaaggcttcaactattacttca 1011  T
Q  145 accaat 150  Q
    ||||||    
T  1010 accaat 1005  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 5055 - 5097
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaag 126  Q
    |||||||||||| ||||||||||||| |||||| |||||||||    
T  5055 agaaaaatttaactttcctccaactcctttaatcaaagttaag 5097  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 7486018 - 7486067
Alignment:
Q  84 agaaaaatttaattttcctccaactcatttaattaaagttaagacttcaa 133  Q
    ||||||| |||| ||||||||||||| |||||| ||||||||| ||||||    
T  7486018 agaaaaaattaactttcctccaactcctttaatcaaagttaaggcttcaa 7486067  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 2094051 - 2094003
Alignment:
Q  102 tccaactcatttaattaaagttaagacttcaattatgaattcaaccaat 150  Q
    |||||||  |||||||||||||||| |||||| ||||| ||||||||||    
T  2094051 tccaacttctttaattaaagttaaggcttcaactatgacttcaaccaat 2094003  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 422
Target Start/End: Original strand, 31609189 - 31609277
Alignment:
Q  334 ttttggagtatgtggaaacatcgaaaccttaaactttgggagaatgaaaatgagttatgtgcaaatgttgttgatagagcacgtcatct 422  Q
    ||||||||| | ||||| || ||||||||||   | ||| || ||||||||||| | || || |||||||||||||||||||| |||||    
T  31609189 ttttggagtttatggaagcaccgaaaccttatgatatggaaggatgaaaatgagatgtgcgctaatgttgttgatagagcacgccatct 31609277  T

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