View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21620_high_9 (Length: 434)

Name: NF21620_high_9
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21620_high_9
NF21620_high_9
[»] chr6 (4 HSPs)
chr6 (321-419)||(17135806-17135904)
chr6 (146-224)||(17135632-17135710)
chr6 (19-112)||(17135505-17135598)
chr6 (76-108)||(17149349-17149381)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 321 - 419
Target Start/End: Original strand, 17135806 - 17135904
Alignment:
Q  321 gcaaaagaataaaattatagatgaattgagtctcaagtaaggttgttaaaatcacgagttaacatgggatcatacgatcctacgagtttaggtatactc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  17135806 gcaaaagaataaaattatagatgaattgagtctcaagtaaggttgttaaaatcacgagttagcatgggatcatacgatcctacgagtctaggtatactc 17135904  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 17135632 - 17135710
Alignment:
Q  146 gaggagaaagtgtaggtgtctatgattatgacgtgtcaactcactgctaagagtttttgtcttatggtctgaggggacg 224  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17135632 gaggaaaaagtgtaggtgtctatgattatgacgtgtcaactcactgctaagagtttttgtcttatggtctgaggggacg 17135710  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 17135505 - 17135598
Alignment:
Q  19 gaacacttgcaagacattagaatcaatatatagtcagtttgagcattgnnnnnnnnttatatggaaaactatataatcaaaatcaacatcttag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  17135505 gaacacttgcaagacattagaatcaatatatagtcagtttgagcattgaaaaaaaattatatggaaaactatataatcaaaatcaacatcttag 17135598  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 17149349 - 17149381
Alignment:
Q  76 tatatggaaaactatataatcaaaatcaacatc 108  Q
    |||||||||||||||||||||||||||||||||    
T  17149349 tatatggaaaactatataatcaaaatcaacatc 17149381  T

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