View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_low_12 (Length: 394)
Name: NF21620_low_12
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 28852378 - 28852121
Alignment:
| Q |
21 |
cattgcgtctaactaatgcatatttcaattcacgcatggattcacttgatgtcactttgcaaagtattagtctgtatattagggacgattcaaggaaagt |
120 |
Q |
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| T |
28852378 |
cattgcgtctaactaatgcatatttcaattcacgcatggattcacttgatgtcactttgcaaagtattagtctgtatattagggacgattcaaggaaagt |
28852279 |
T |
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| Q |
121 |
tgaatatgatgtatccatccctgtattagatagttctatcatctaaggtttttcattgtatgaaaataaaaatataagcttgtctatcttctcactcatt |
220 |
Q |
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| T |
28852278 |
tgaatatgatgtatccatccctgtattagatagttctatcatctaaggtttttcattgtatgaaaataaaaatataagcttgtctatcttcacactcatt |
28852179 |
T |
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| Q |
221 |
tccaacaagttaacctctccttcgcgaaacaactcaaataccaatggtaaagtatatatattactgaag |
289 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
28852178 |
tccaacaagttaacctctccttcgtg-----------ataccaatggtaaagtatatatattactgaag |
28852121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 258 - 391
Target Start/End: Complemental strand, 28852120 - 28851987
Alignment:
| Q |
258 |
ataccaatggtaaagtatatatattactgaagttcaatatcacataacagataagggaaaagtacagtacagtgtcggtgtgtacacatattatgtcaaa |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28852120 |
ataccaatggtaaagtatatatattactgaagttcaatatcacataacagataagggaaaagtacagtacagcgtcggtgtgtacacatattatgtcaaa |
28852021 |
T |
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| Q |
358 |
actcaaatgaaacttgacttgcctgcttaccaaa |
391 |
Q |
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| T |
28852020 |
actcaaatgaaacttgacttgcctgcttaccaaa |
28851987 |
T |
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