View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21620_low_13 (Length: 388)

Name: NF21620_low_13
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21620_low_13
NF21620_low_13
[»] chr4 (12 HSPs)
chr4 (18-385)||(39305796-39306162)
chr4 (245-378)||(30617211-30617343)
chr4 (297-385)||(26275534-26275622)
chr4 (295-378)||(415131-415214)
chr4 (246-326)||(41364956-41365036)
chr4 (304-378)||(33714228-33714302)
chr4 (244-326)||(42647416-42647498)
chr4 (244-314)||(4447944-4448014)
chr4 (305-351)||(19984344-19984390)
chr4 (224-273)||(13253174-13253223)
chr4 (257-349)||(34581594-34581686)
chr4 (294-330)||(46891320-46891356)
[»] chr7 (27 HSPs)
chr7 (237-385)||(23117293-23117441)
chr7 (245-378)||(30900054-30900187)
chr7 (237-377)||(2898879-2899019)
chr7 (242-348)||(24672213-24672319)
chr7 (244-350)||(24672804-24672909)
chr7 (257-378)||(38921248-38921369)
chr7 (294-374)||(38774311-38774391)
chr7 (293-380)||(24945591-24945678)
chr7 (238-291)||(31809142-31809195)
chr7 (245-338)||(32612403-32612496)
chr7 (304-380)||(24942479-24942555)
chr7 (246-370)||(18749198-18749324)
chr7 (244-291)||(19043263-19043310)
chr7 (244-291)||(20711326-20711373)
chr7 (244-366)||(2219467-2219588)
chr7 (244-330)||(21173837-21173923)
chr7 (304-378)||(32231748-32231822)
chr7 (238-332)||(32888968-32889062)
chr7 (311-385)||(46404621-46404695)
chr7 (245-330)||(24673366-24673451)
chr7 (297-378)||(28976499-28976580)
chr7 (247-292)||(32736045-32736090)
chr7 (298-367)||(39417759-39417828)
chr7 (247-291)||(5627515-5627559)
chr7 (246-349)||(19130167-19130271)
chr7 (294-370)||(38622870-38622946)
chr7 (237-349)||(44124546-44124658)
[»] chr6 (12 HSPs)
chr6 (244-385)||(33532432-33532573)
chr6 (254-378)||(13427661-13427785)
chr6 (244-370)||(430975-431101)
chr6 (237-364)||(1912440-1912567)
chr6 (245-289)||(30530004-30530048)
chr6 (302-372)||(34881705-34881775)
chr6 (222-274)||(8600773-8600825)
chr6 (320-371)||(9742529-9742580)
chr6 (242-276)||(4886289-4886323)
chr6 (246-288)||(26327938-26327980)
chr6 (305-378)||(4886196-4886269)
chr6 (238-291)||(19041608-19041661)
[»] chr1 (20 HSPs)
chr1 (236-385)||(15255151-15255300)
chr1 (238-365)||(6025905-6026032)
chr1 (243-378)||(46937556-46937682)
chr1 (295-385)||(7347672-7347762)
chr1 (246-378)||(43391477-43391609)
chr1 (295-366)||(3950671-3950742)
chr1 (294-385)||(35220778-35220869)
chr1 (237-343)||(17484572-17484678)
chr1 (247-378)||(7991504-7991635)
chr1 (247-333)||(8856784-8856870)
chr1 (239-301)||(52195632-52195694)
chr1 (304-377)||(49825844-49825917)
chr1 (294-373)||(3240470-3240549)
chr1 (245-378)||(7600420-7600550)
chr1 (315-378)||(8344563-8344626)
chr1 (243-385)||(24808328-24808470)
chr1 (245-333)||(17797624-17797712)
chr1 (256-368)||(22925211-22925323)
chr1 (246-314)||(32434869-32434937)
chr1 (293-365)||(47847980-47848051)
[»] chr5 (16 HSPs)
chr5 (237-329)||(41846717-41846809)
chr5 (244-370)||(16214052-16214178)
chr5 (295-381)||(42217632-42217718)
chr5 (237-378)||(10440209-10440350)
chr5 (245-376)||(9634890-9635020)
chr5 (304-370)||(27725501-27725567)
chr5 (245-298)||(33534632-33534685)
chr5 (258-373)||(6926331-6926446)
chr5 (305-377)||(8928401-8928473)
chr5 (255-318)||(11709459-11709522)
chr5 (242-353)||(31632209-31632320)
chr5 (320-371)||(34114360-34114411)
chr5 (246-324)||(42251599-42251677)
chr5 (249-331)||(42253908-42253990)
chr5 (244-361)||(40213830-40213946)
chr5 (236-268)||(6586614-6586646)
[»] chr3 (13 HSPs)
chr3 (243-384)||(36060245-36060389)
chr3 (242-378)||(5033317-5033453)
chr3 (254-364)||(7877774-7877884)
chr3 (244-308)||(2082056-2082120)
chr3 (301-366)||(29208263-29208328)
chr3 (297-377)||(162890-162970)
chr3 (300-364)||(2990979-2991043)
chr3 (242-289)||(21011361-21011408)
chr3 (307-385)||(54084291-54084369)
chr3 (340-377)||(7277069-7277106)
chr3 (304-345)||(14794295-14794336)
chr3 (247-332)||(50061821-50061906)
chr3 (280-368)||(43381172-43381260)
[»] chr2 (10 HSPs)
chr2 (285-375)||(11530018-11530108)
chr2 (304-375)||(39597566-39597637)
chr2 (285-371)||(28804329-28804415)
chr2 (245-298)||(16866663-16866716)
chr2 (304-364)||(39597642-39597702)
chr2 (294-365)||(18264808-18264879)
chr2 (320-370)||(33623691-33623741)
chr2 (295-349)||(35921517-35921571)
chr2 (305-371)||(42035506-42035571)
chr2 (242-287)||(18569497-18569542)
[»] chr8 (14 HSPs)
chr8 (245-370)||(1310124-1310249)
chr8 (238-331)||(42822618-42822711)
chr8 (300-377)||(9112405-9112482)
chr8 (237-365)||(10354756-10354883)
chr8 (245-331)||(2722146-2722232)
chr8 (222-308)||(7108228-7108314)
chr8 (243-378)||(16900883-16901018)
chr8 (304-380)||(43935150-43935226)
chr8 (237-378)||(21226911-21227052)
chr8 (336-372)||(30580440-30580476)
chr8 (245-328)||(41686218-41686301)
chr8 (247-365)||(8284292-8284410)
chr8 (282-348)||(41931066-41931132)
chr8 (345-385)||(11674048-11674088)
[»] scaffold0223 (1 HSPs)
scaffold0223 (245-327)||(10620-10702)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 39306162 - 39305796
Alignment:
Q  18 atatggatcttccttgactgatagaacgatgaatctgataaattatagctgccacagccattttttggcagcatcttcagcttcaatgtttattgatgtc 117  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39306162 atatggatcttccttgactgaaagaacggtgaatctgataaattatagctgccacaaccattttttggcagcatcttcagcttcaatgtttattgatgtc 39306063  T
Q  118 atgctggcactcgagaggtgagaataagaaaaccattttttgcaaataatacctactacagcctagccgtctacaggtttcgtgcctgtatgaatctgta 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39306062 atgctggcactcgagaggtgagaataagaagaccattttttgcaaataatacctactacagcctagtcgtctacaggtttcgtgcctgtatgaatctgta 39305963  T
Q  218 aatcagtgttgttcatcctggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatat 317  Q
    ||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39305962 aataagtgttgttcatcctggatagtgg-aaatagcggtttgttcaaattctgctacgcggcagtgctattgtgtcgctatagccactatttcacaatat 39305864  T
Q  318 tctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39305863 tctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgctata 39305796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 378
Target Start/End: Original strand, 30617211 - 30617343
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 344  Q
    ||||||||||||||||||||||||  ||||||  || ||||||||  ||||||| ||||||||||||||||||| |||||| ||||||| |||   ||||    
T  30617211 gaaaatagcggtttgttcaaattccactacgcaacaatgctatagcatcgctattgccactatttcacaatattttgtact-aatagcgtatcacagaac 30617309  T
Q  345 aatagtgatatgttcaaattctgctatgcaatag 378  Q
    | ||| ||| ||||||||||| ||||||||||||    
T  30617310 actagcgatttgttcaaattccgctatgcaatag 30617343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 26275534 - 26275622
Alignment:
Q  297 atagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    |||||| ||||||||||||||| |||||||||||||| ||  ||||||||||| ||| ||||||||| | |||||||||||||| ||||    
T  26275534 atagccgctatttcacaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaatcccgctatgcaatagtgctata 26275622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 415214 - 415131
Alignment:
Q  295 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    ||||||| |||||||||||| ||| ||||||||||||| ||||  | |||||||| ||  ||||||||||||||||||| ||||    
T  415214 ctatagcaactatttcacaacattttgtactaaatagcaaatcacgaaacaatagcgacttgttcaaattctgctatgctatag 415131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 41365036 - 41364956
Alignment:
Q  246 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtacta 326  Q
    ||||| || ||||||||||||||||||||||  ||||||||||| |  | ||||| | ||||||||||||||| |||||||    
T  41365036 aaaatggcagtttgttcaaattctgctacgcaacagtgctatagcgctgttatagacgctatttcacaatattttgtacta 41364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 33714228 - 33714302
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    ||||||||||||||| |||||||||| ||  |||||||||||| || ||| |||||||||||  |||| ||||||    
T  33714228 ctatttcacaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaattccactatacaatag 33714302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 42647498 - 42647416
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtacta 326  Q
    ||||||||||||||||||||||||| |||||||  ||  ||| ||||| ||||||| | ||| ||| |||||||| |||||||    
T  42647498 ggaaaatagcggtttgttcaaattccgctacgcaacaaagctctagtgccgctataactactgtttgacaatattttgtacta 42647416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 4448014 - 4447944
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaa 314  Q
    ||||||||||||||||||||||||| |||||||  | ||||| |||  | |||| ||||||||||| ||||    
T  4448014 ggaaaatagcggtttgttcaaattccgctacgctacggtgctttagcattgctacagccactatttgacaa 4447944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 19984344 - 19984390
Alignment:
Q  305 tatttcacaatattctgtactaaatagcgaatcgtggaacaatagtg 351  Q
    |||||||||||||| ||||||||||| || ||| |||||||||||||    
T  19984344 tatttcacaatattttgtactaaataacgtatcatggaacaatagtg 19984390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 13253174 - 13253223
Alignment:
Q  224 tgttgttcatcctggatagcggaaaatagcggtttgttcaaattctgcta 273  Q
    ||||||| ||| || || |||| |||||||||||||||||||||||||||    
T  13253174 tgttgttaatcgtgcatggcggcaaatagcggtttgttcaaattctgcta 13253223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 349
Target Start/End: Complemental strand, 34581686 - 34581594
Alignment:
Q  257 ttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatag 349  Q
    ||||| |||||||| ||||   ||||||||||| |   |||||||| |||||| |||| ||| |||||||||||||| |||  ||||||||||    
T  34581686 ttgtttaaattctgatacgtaacagtgctatagcgctactatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaatag 34581594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 46891320 - 46891356
Alignment:
Q  294 gctatagccactatttcacaatattctgtactaaata 330  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  46891320 gctatagccgctatttcacaatattttgtactaaata 46891356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 237 - 385
Target Start/End: Original strand, 23117293 - 23117441
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 336  Q
    |||| ||||||||||| ||||||||||||||| |||||| | ||||||||||| |  |||||| |||||||||||||| ||| ||| |||||||||  ||    
T  23117293 ggattgcggaaaatagtggtttgttcaaattccgctacgtgacagtgctatagcgctgctatacccactatttcacaacattttgtgctaaatagcatat 23117392  T
Q  337 cgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    | ||||| ||||| ||| ||||||||||||||||| |||||| ||||||    
T  23117393 catggaaaaatagcgatttgttcaaattctgctattcaatagcgttata 23117441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 378
Target Start/End: Original strand, 30900054 - 30900187
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 344  Q
    |||||||| |||||| |||||||| |||| |   |||| ||||||   ||| |||||||||||||||||||||| |||||||||||| | ||||  ||||    
T  30900054 gaaaatagtggtttgctcaaattccgctatgtaacagtactatagcaccgcgatagccactatttcacaatattttgtactaaatagtgtatcgctgaac 30900153  T
Q  345 aatagtgatatgttcaaattctgctatgcaatag 378  Q
    ||||| |||  |||||||||| ||||||||||||    
T  30900154 aatagcgattcgttcaaattccgctatgcaatag 30900187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 2899019 - 2898879
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 336  Q
    |||||||||||||||| ||| ||||||||| | |||||    || |||| ||| | |||||||||||||||||||||||||| || | ||||||||| ||    
T  2899019 ggatagcggaaaatagtggtatgttcaaataccgctacataacaatgctgtagggccgctatagccactatttcacaatattttgcattaaatagcgtat 2898920  T
Q  337 cgtggaacaatagtgatatgttcaaattctgctatgcaata 377  Q
    |  |||||||||||||| |||  |||||| |||| ||||||    
T  2898919 cacggaacaatagtgatttgtcgaaattccgctaggcaata 2898879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 24672213 - 24672319
Alignment:
Q  242 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgg 341  Q
    ||||||||||| ||||||||||||||| || || | || |||||||||   || | |||||||||||| | |||||| |||||||||||||| || || |    
T  24672213 gcggaaaatagtggtttgttcaaattccgcaacacagcggtgctatagaaccgttgtagccactatttgaaaatattatgtactaaatagcgtattgtag 24672312  T
Q  342 aacaata 348  Q
    |||||||    
T  24672313 aacaata 24672319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 350
Target Start/End: Original strand, 24672804 - 24672909
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 343  Q
    |||||||||||||||||||||||||||||||||   |||| ||| |   ||||||||   |||||| |||||||| ||||||| |||| | |||||||||    
T  24672804 ggaaaatagcggtttgttcaaattctgctacgcaatagtgatatggcaccgctatagagcctatttgacaatatt-tgtactatatagagtatcgtggaa 24672902  T
Q  344 caatagt 350  Q
    |||||||    
T  24672903 caatagt 24672909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 378
Target Start/End: Complemental strand, 38921369 - 38921248
Alignment:
Q  257 ttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatg 356  Q
    |||||||||||| ||||| |  || |||||||| | | || |||| |||| ||||||||||| || |||||||||   ||||  |||||| |||||| ||    
T  38921369 ttgttcaaattccgctacacaacaatgctatagcgccactgtagctactacttcacaatattttgcactaaatagtatatcgcagaacaacagtgatttg 38921270  T
Q  357 ttcaaattctgctatgcaatag 378  Q
    ||||||||||| ||||||||||    
T  38921269 ttcaaattctgttatgcaatag 38921248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 38774311 - 38774391
Alignment:
Q  294 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgca 374  Q
    ||||||||| |||||| |||| ||  |||||||||||||  | ||  ||||||||||||| ||||||||||||||||||||    
T  38774311 gctatagccgctatttgacaacatgatgtactaaatagcataacgctgaacaatagtgatttgttcaaattctgctatgca 38774391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 24945678 - 24945591
Alignment:
Q  293 cgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtg 380  Q
    ||||| |||| |||||| |||| ||| ||| |||  ||||| ||||||||||||||||||| |||||| |||||| ||||| ||||||    
T  24945678 cgctacagccgctatttgacaacattttgtgctagttagcgtatcgtggaacaatagtgatctgttcatattctgttatgctatagtg 24945591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 31809195 - 31809142
Alignment:
Q  238 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 291  Q
    |||||||||||| ||||||||| |||||||| |||||||  |||||||||||||    
T  31809195 gatagcggaaaacagcggtttgatcaaattccgctacgcaacagtgctatagtg 31809142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 32612403 - 32612496
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcg 338  Q
    ||||||||||||||  |||||||| ||||| |  ||||||||||| | | | ||||||  || ||||||||||| |||||||||||||| ||||    
T  32612403 gaaaatagcggtttagtcaaattccgctacacaacagtgctatagcgccaccatagccggtacttcacaatattttgtactaaatagcgtatcg 32612496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 24942555 - 24942479
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtg 380  Q
    |||||| |||| ||| |||||||| ||||| ||| ||||||||||| ||| |||||| |||||| ||||| ||||||    
T  24942555 ctatttgacaacattttgtactaattagcgtatcatggaacaatagcgatctgttcatattctgttatgctatagtg 24942479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 370
Target Start/End: Original strand, 18749198 - 18749324
Alignment:
Q  246 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtc--gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 343  Q
    |||||||| ||||||||||||| || ||| |  ||||||||||| ||   ||||||||| || ||| |||| ||||||||||||||| || || | ||||    
T  18749198 aaaatagcagtttgttcaaattatgttacacaacagtgctatagcgtgctgctatagccgctgtttgacaacattctgtactaaatatcgtatagcggaa 18749297  T
Q  344 caatagtgatatgttcaaattctgcta 370  Q
    ||||||   | ||| ||||||||||||    
T  18749298 caatagcattttgtccaaattctgcta 18749324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 19043310 - 19043263
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 291  Q
    |||||||||||||||||| || ||||||||||  ||||||||||||||    
T  19043310 ggaaaatagcggtttgtttaagttctgctacggtgcagtgctatagtg 19043263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 20711326 - 20711373
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 291  Q
    |||||||||||||||||| || ||||||||||  ||||||||||||||    
T  20711326 ggaaaatagcggtttgtttaagttctgctacggtgcagtgctatagtg 20711373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 366
Target Start/End: Original strand, 2219467 - 2219588
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 343  Q
    ||||||||| | ||||||||||||||| ||| |  || ||||||||   || |||| || |||||| |||||||| |||||||||||||  |||   |||    
T  2219467 ggaaaatagtgatttgttcaaattctgttac-caacaatgctatagcaccgttataaccgctatttgacaatattttgtactaaatagcatatcagagaa 2219565  T
Q  344 caatagtgatatgttcaaattct 366  Q
    |||||  ||||||||||||||||    
T  2219566 caataacgatatgttcaaattct 2219588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 21173837 - 21173923
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaata 330  Q
    |||||||||||| ||||||||||||  ||| ||  | ||| |||| || || |||| || ||||||||||||||| |||||||||||    
T  21173837 ggaaaatagcggattgttcaaattccactatgcaactgtgttataatgccgttatatccgctatttcacaatattttgtactaaata 21173923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 32231822 - 32231748
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    ||||||||||||||| ||| ||||||| |  |||   ||||| ||| ||| ||||||||||||||||||||||||    
T  32231822 ctatttcacaatattttgtgctaaataacatatcacagaacactagagatttgttcaaattctgctatgcaatag 32231748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 32889062 - 32888968
Alignment:
Q  238 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagc 332  Q
    ||||||||||||| | || ||||||||||||  ||| ||  ||| | ||||| | ||| ||||||||||||| |||||| | |||||||||||||    
T  32889062 gatagcggaaaattgtggcttgttcaaattccactatgctacagagttatagcgccgcaatagccactatttgacaatactttgtactaaatagc 32888968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 46404621 - 46404695
Alignment:
Q  311 acaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    |||||||| | |||||||||| | |||||||||||||||  || ||||||||||||| || |  |||||||||||    
T  46404621 acaatattttatactaaatagtgtatcgtggaacaatagatatttgttcaaattctgataggttatagtgttata 46404695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 24673366 - 24673451
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaata 330  Q
    |||||||| ||||||||||||||| |||| ||  ||||| ||| ||| |||||||||  |||||| |||| ||| |||||| ||||    
T  24673366 gaaaatagtggtttgttcaaattcagctatgcaacagtgatatggtgccgctatagcggctatttgacaacattttgtactgaata 24673451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 28976499 - 28976580
Alignment:
Q  297 atagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    |||||||||||||||||||||| ||||||||||     |||||||| |||| |   | ||||||||||| ||||||||||||    
T  28976499 atagccactatttcacaatattatgtactaaatcatatatcgtggaccaatggcagtttgttcaaattccgctatgcaatag 28976580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 32736045 - 32736090
Alignment:
Q  247 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgt 292  Q
    |||||||||||||||||||||| |||||||  || |||||||||||    
T  32736045 aaatagcggtttgttcaaattccgctacgcaacactgctatagtgt 32736090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 39417828 - 39417759
Alignment:
Q  298 tagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctg 367  Q
    |||||||| ||  |||| ||| ||||||| |||||  |||| |||||||||||||| |||||||||||||    
T  39417828 tagccactgttagacaacattttgtactatatagcatatcgcggaacaatagtgatttgttcaaattctg 39417759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 5627515 - 5627559
Alignment:
Q  247 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 291  Q
    |||||||||||| ||||||||| |||||||  |||||||||||||    
T  5627515 aaatagcggtttattcaaattccgctacgcaacagtgctatagtg 5627559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 19130167 - 19130271
Alignment:
Q  246 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagcc-actatttcacaatattctgtactaaatagcgaatcgtggaac 344  Q
    |||||||  ||||||||||| ||||||| ||   ||||||||| ||||||| || || | ||||| |||| | | |||||||||||||| || |||||||    
T  19130167 aaaataggagtttgttcaaaatctgctatgctatagtgctataatgtcgctgtaacctattatttgacaacactttgtactaaatagcgtattgtggaac 19130266  T
Q  345 aatag 349  Q
    |||||    
T  19130267 aatag 19130271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 38622870 - 38622946
Alignment:
Q  294 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgcta 370  Q
    ||||||||| |||||| |||| ||| ||| |||||||| | ||| ||||||||||  ||| | ||||||||||||||    
T  38622870 gctatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattctgcta 38622946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 44124658 - 44124546
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 336  Q
    |||||||||||||||||   ||||| ||||||  || |||   || ||||||| | ||||||| |  |||||| ||||||||||||||||||||| | ||    
T  44124658 ggatagcggaaaatagcatattgttaaaattccactgcgcaatagggctatagcgccgctatatcagctatttgacaatattctgtactaaatagtgtat 44124559  T
Q  337 cgtggaacaatag 349  Q
    ||  |||||||||    
T  44124558 cgcagaacaatag 44124546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 385
Target Start/End: Original strand, 33532432 - 33532573
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 343  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||| |   |||||||  || ||| |||| |||||||||||||||||| || ||| ||    
T  33532432 ggaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgacaacattctgtactaaatagcgtatagtgtaa 33532531  T
Q  344 caatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    |||| | ||| ||||||||||||| || || |||||| ||||    
T  33532532 caatggcgatttgttcaaattctgttacgctatagtgctata 33532573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 378
Target Start/End: Original strand, 13427661 - 13427785
Alignment:
Q  254 ggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgat 353  Q
    ||||||||||||||||| || ||   ||||||||| ||  |||| || ||||||||||||||||| |||||||||||  |  || ||||||||||| |||    
T  13427661 ggtttgttcaaattctgttaggcaatagtgctataatgctgctacagtcactatttcacaatattttgtactaaataatgtgtcatggaacaatagcgat 13427760  T
Q  354 atgttcaaattctgctatgcaatag 378  Q
     |||| |||||||||||||||||||    
T  13427761 ttgttgaaattctgctatgcaatag 13427785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 370
Target Start/End: Complemental strand, 431101 - 430975
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 343  Q
    |||||||||| |||  |||||||||||||||||  ||||||||||| |   |||||||| |||||| |||||||| |||||||| |||   ||  |||||    
T  431101 ggaaaatagcagttcattcaaattctgctacgcaacagtgctatagcgcatctatagccgctatttaacaatattttgtactaagtagtttataatggaa 431002  T
Q  344 caatagtgatatgttcaaattctgcta 370  Q
    |||||||||| |||||||||| |||||    
T  431001 caatagtgatttgttcaaattttgcta 430975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 364
Target Start/End: Original strand, 1912440 - 1912567
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 336  Q
    |||| ||||||||||| ||||||||||||||| |||| ||  | ||||||||| ||| |||||| | |||||| |||||| | ||||||||||||   ||    
T  1912440 ggatcgcggaaaatagaggtttgttcaaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaataatttgtactaaatagtatat 1912539  T
Q  337 cgtggaacaatagtgatatgttcaaatt 364  Q
    ||  ||||||||| ||| ||||||||||    
T  1912540 cgcagaacaatagcgatttgttcaaatt 1912567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 30530004 - 30530048
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatag 289  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  30530004 gaaaatagcggtttgttcaaattctgctacgcaacagtgctatag 30530048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 34881775 - 34881705
Alignment:
Q  302 cactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatg 372  Q
    |||||||| |||| | | |||||||||||||| |||||||||| |||||||| |||||| |||| ||||||    
T  34881775 cactatttgacaagactttgtactaaatagcgtatcgtggaacgatagtgatttgttcatattccgctatg 34881705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 8600825 - 8600773
Alignment:
Q  222 agtgttgttcatcctggatagcggaaaatagcggtttgttcaaattctgctac 274  Q
    ||||||||| |||  |||| |||||||||||| ||||||||||||||||||||    
T  8600825 agtgttgttaatcacggattgcggaaaatagcagtttgttcaaattctgctac 8600773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 9742529 - 9742580
Alignment:
Q  320 tgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctat 371  Q
    |||||||||| ||| |||| ||||||||| |||| |||||||||||||||||    
T  9742529 tgtactaaatggcgtatcgcggaacaatactgatttgttcaaattctgctat 9742580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 4886323 - 4886289
Alignment:
Q  242 gcggaaaatagcggtttgttcaaattctgctacgc 276  Q
    |||||||||||| ||||||||||||||||||||||    
T  4886323 gcggaaaatagctgtttgttcaaattctgctacgc 4886289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 26327980 - 26327938
Alignment:
Q  246 aaaatagcggtttgttcaaattctgctacgcggcagtgctata 288  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||    
T  26327980 aaaatagtggtttgttcaaattccgctatgcggcagtgctata 26327938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 4886269 - 4886196
Alignment:
Q  305 tatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    ||||| ||||| || || ||||||||||  |||| |||||||||| ||| |||||||||||  |||||||||||    
T  4886269 tattttacaatgttttgcactaaatagcatatcgcggaacaatagagatttgttcaaattccactatgcaatag 4886196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 19041661 - 19041608
Alignment:
Q  238 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtg 291  Q
    |||||| ||||||| | |||| |||||||||||||||||  |||||||||||||    
T  19041661 gatagcagaaaataacagtttattcaaattctgctacgctacagtgctatagtg 19041608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 385
Target Start/End: Original strand, 15255151 - 15255300
Alignment:
Q  236 tggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaa 335  Q
    ||||| || |||||||| |||||||| ||||||||||| ||  || |||||||||| ||||||||||||| |||||||||||| || ||||||||||  |    
T  15255151 tggatcgcagaaaatagtggtttgtttaaattctgctatgcaacattgctatagtgccgctatagccactgtttcacaatattatgcactaaatagcata 15255250  T
Q  336 tcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    ||  ||||||  | |||| ||| |||| || |||||||||||||| ||||    
T  15255251 tcacggaacataattgatttgtacaaactccgctatgcaatagtgctata 15255300  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 365
Target Start/End: Original strand, 6025905 - 6026032
Alignment:
Q  238 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatc 337  Q
    |||||| |||||||| || ||||| |||||||||| | |  ||||||||||| |  |||||||||||||||| |||| ||| |||||||||||||  |||    
T  6025905 gatagcagaaaatagtggattgttaaaattctgctgcccaacagtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatc 6026004  T
Q  338 gtggaacaatagtgatatgttcaaattc 365  Q
    | |||||||||   || |||||||||||    
T  6026005 gcggaacaataactatttgttcaaattc 6026032  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 46937682 - 46937556
Alignment:
Q  243 cggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgga 342  Q
    |||||||||||||||||||||||||| |||| ||  ||||| ||||| |         |||||||||||||||||| |||||||||||||| |||| |||    
T  46937682 cggaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcg---------ccactatttcacaatattttgtactaaatagcgcatcgcgga 46937592  T
Q  343 acaatagtgatatgttcaaattctgctatgcaatag 378  Q
    |||||||   | ||||||||||| |||| |||||||    
T  46937591 acaatagcactttgttcaaattccgctaagcaatag 46937556  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 385
Target Start/End: Complemental strand, 7347762 - 7347672
Alignment:
Q  295 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    |||||||| ||||||||||||||| |||||||||||| | || |   ||||||||  || |||||||||||||||||||||||| ||||||    
T  7347762 ctatagccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgctatgcaatagcgttata 7347672  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 378
Target Start/End: Original strand, 43391477 - 43391609
Alignment:
Q  246 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaaca 345  Q
    |||||||| |||||||  | |||||||| ||  |||||||||||    ||||||||| | |||| |||| ||| |||||||||||| | |||| ||||||    
T  43391477 aaaatagcagtttgtttgagttctgctatgcaacagtgctatagcaatgctatagccgccatttgacaacattttgtactaaatagtgcatcggggaaca 43391576  T
Q  346 atagtgatatgttcaaattctgctatgcaatag 378  Q
    |||| ||| |||||||||||||| |||| ||||    
T  43391577 atagcgatttgttcaaattctgccatgctatag 43391609  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 3950742 - 3950671
Alignment:
Q  295 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattct 366  Q
    |||||||  |||||||||| ||||  ||||||||||||| |||| |||||||||||||| ||||||||||||    
T  3950742 ctatagcagctatttcacattatttggtactaaatagcgtatcgcggaacaatagtgatttgttcaaattct 3950671  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 35220869 - 35220778
Alignment:
Q  294 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    |||||||| |||||||||||||||| ||||||| ||| || || | |||||||| |  || |||||| ||||||||||||| ||||||||||    
T  35220869 gctatagcaactatttcacaatattttgtactagataacgtattgcggaacaattgctatttgttcagattctgctatgcagtagtgttata 35220778  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 343
Target Start/End: Original strand, 17484572 - 17484678
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 336  Q
    ||||||| |||||||| | ||||||||||||| |||| ||  || ||||||||||||||||||||  |  ||||||||||||  |||||| |||| | ||    
T  17484572 ggatagcagaaaatagagatttgttcaaattccgctaagcaacactgctatagtgtcgctatagctgccgtttcacaatatttggtactagatagtgtat 17484671  T
Q  337 cgtggaa 343  Q
    |||||||    
T  17484672 cgtggaa 17484678  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 378
Target Start/End: Complemental strand, 7991635 - 7991504
Alignment:
Q  247 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaa 346  Q
    |||||||||||||||  |||||  ||| ||  || |||||||| | | || ||||  ||||||||||||||| |||||||||| ||| |||  |||||||    
T  7991635 aaatagcggtttgttataattccactaagcaacactgctatagcgccactctagctgctatttcacaatattatgtactaaatggcgtatcacggaacaa 7991536  T
Q  347 tagtgatatgttcaaattctgctatgcaatag 378  Q
    ||||| | ||||||||||  || |||||||||    
T  7991535 tagtggtttgttcaaatttcgcaatgcaatag 7991504  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 8856870 - 8856784
Alignment:
Q  247 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcg 333  Q
    ||||||||||||||||||||||  ||||    ||||||||||||| |||||||||  |||||| |||| | |||||||| |||||||    
T  8856870 aaatagcggtttgttcaaattccactacaatacagtgctatagtgccgctatagcttctatttgacaacactctgtactgaatagcg 8856784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 52195694 - 52195632
Alignment:
Q  239 atagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagc 301  Q
    ||||||||||||| ||||||||| ||||||| |||| || ||||||||||| | |||||||||    
T  52195694 atagcggaaaataacggtttgttaaaattctactacacgacagtgctatagcgccgctatagc 52195632  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 49825917 - 49825844
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 377  Q
    ||||||||||||||| |||||||||||| | || |  ||||||||||| | |  ||||||||||||||||||||    
T  49825917 ctatttcacaatattttgtactaaatagtgtattgcagaacaatagtgttttagtcaaattctgctatgcaata 49825844  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 3240549 - 3240470
Alignment:
Q  294 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgc 373  Q
    ||||||||| |||||| |||| ||| | || ||||||||| ||||   |||||||||||| ||||||| |||||||||||    
T  3240549 gctatagcctctatttgacaacattgtttaataaatagcgtatcgcaaaacaatagtgatttgttcaagttctgctatgc 3240470  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 378
Target Start/End: Original strand, 7600420 - 7600550
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 344  Q
    |||||||| | ||||||||||||||||||| |   |||||||||| | | ||||||| || |||||||| || | |||||||   |||| ||||||||||    
T  7600420 gaaaatagtgttttgttcaaattctgctacacaatagtgctatagcgccactatagcaacaatttcacagtaatttgtacta---agcgtatcgtggaac 7600516  T
Q  345 aatagtgatatgttcaaattctgctatgcaatag 378  Q
    ||||  ||| |||| ||||||   ||||||||||    
T  7600517 aataaagatttgttaaaattccattatgcaatag 7600550  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 8344626 - 8344563
Alignment:
Q  315 tattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    |||| |||||||||||||  || |||||| ||||||| | ||||||||||||||||||| ||||    
T  8344626 tattttgtactaaatagcttattgtggaaaaatagtggtttgttcaaattctgctatgctatag 8344563  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 385
Target Start/End: Complemental strand, 24808470 - 24808328
Alignment:
Q  243 cggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgga 342  Q
    ||||||| || |||||||||||||||||||| ||  ||||||| |||    |||||  ||| ||||| |||| | | || |||||||| |  |||| |||    
T  24808470 cggaaaacagtggtttgttcaaattctgctatgctacagtgctttagcactgctatgaccattatttgacaacactttgaactaaataccatatcgcgga 24808371  T
Q  343 acaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    | |||||| || |||||||||||||| |||  |||||||||||    
T  24808370 ataatagtaatttgttcaaattctgcaatggtatagtgttata 24808328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 17797712 - 17797624
Alignment:
Q  245 gaaaatagcggtttgttcaaa-ttctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcg 333  Q
    ||||||||||||||||||||| |||| ||||||  || | | ||||   |||||||||||||||| ||||||||| | ||||||||||||    
T  17797712 gaaaatagcggtttgttcaaaattct-ctacgcaacactaccatagcaccgctatagccactattgcacaatattttctactaaatagcg 17797624  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 368
Target Start/End: Original strand, 22925211 - 22925323
Alignment:
Q  256 tttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatat 355  Q
    |||||||||||||||||||||   | |||||||| |  ||||||||  ||| || |||||| | |||| || ||  || ||||||||||||||||| | |    
T  22925211 tttgttcaaattctgctacgctatattgctatagagctgctatagctgctacttgacaatactttgtattagattacgtatcgtggaacaatagtggttt 22925310  T
Q  356 gttcaaattctgc 368  Q
    ||| |||||||||    
T  22925311 gttaaaattctgc 22925323  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 32434869 - 32434937
Alignment:
Q  246 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaa 314  Q
    ||||||| |||||||||||||| ||| || | |||||||| || ||| ||||||||| |||||| ||||    
T  32434869 aaaatagtggtttgttcaaattttgcaacacagcagtgctttattgttgctatagccgctatttaacaa 32434937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 365
Target Start/End: Original strand, 47847980 - 47848051
Alignment:
Q  293 cgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattc 365  Q
    |||||||||| |||||| |||| ||| ||||| |||| ||  ||||||||||||||| ||| |||||||||||    
T  47847980 cgctatagccgctatttgacaacattttgtac-aaatggcatatcgtggaacaatagcgatttgttcaaattc 47848051  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 41846717 - 41846809
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaat 329  Q
    |||||||  |||| ||||||||| ||||||||||||| || |||||||||||| | |||||||| ||| ||||||||||||| ||||||||||    
T  41846717 ggatagcaaaaaacagcggtttgctcaaattctgctatgcagcagtgctatagcgccgctatagtcaccatttcacaatattttgtactaaat 41846809  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 370
Target Start/End: Original strand, 16214052 - 16214178
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 343  Q
    ||||||||||||  ||||||||||| |||| || ||||| |||||| || ||||||| |||||||| |||| ||| |||||||||| ||| ||| |||||    
T  16214052 ggaaaatagcggcatgttcaaattccgctaggcagcagtactatagcgttgctatagtcactatttgacaacattatgtactaaattgcgtatcatggaa 16214151  T
Q  344 caatagtgatatgttcaaattctgcta 370  Q
    ||| || |||  |||||||||| ||||    
T  16214152 caacagcgattagttcaaattccgcta 16214178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 42217632 - 42217718
Alignment:
Q  295 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgt 381  Q
    |||||||||||||||||||||||| |||||||| ||||| ||| | | || | |||||| |||||||||||  ||||||||||||||    
T  42217632 ctatagccactatttcacaatattttgtactaagtagcgtatcattggacgacagtgatttgttcaaattccactatgcaatagtgt 42217718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 10440350 - 10440209
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 336  Q
    |||| ||||||||||| || |||||||||||| ||||||| ||||||  |||| |||||||||||   |  |  |||||||| | | |||||||||| ||    
T  10440350 ggatcgcggaaaatagtggattgttcaaattcggctacgcagcagtgtgatagcgtcgctatagctggttctgtacaatattatctgctaaatagcgtat 10440251  T
Q  337 cgtggaacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    ||||||| ||||| ||  ||||||||||| | ||||||||||    
T  10440250 cgtggaataatagcgacttgttcaaattcggttatgcaatag 10440209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 376
Target Start/End: Original strand, 9634890 - 9635020
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 344  Q
    |||||||||||||||||||||||| |||||||  || |||||||| | ||||||||   |||||||| |||||| | ||| |||||| | || | |||||    
T  9634890 gaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgccgctatagttgctatttcaaaatattttatacaaaatagtgtat-gcggaac 9634988  T
Q  345 aatagtgatatgttcaaattctgctatgcaat 376  Q
    |||||  || ||||||||||| |||| |||||    
T  9634989 aatagccatttgttcaaattccgctaagcaat 9635020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 27725567 - 27725501
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgcta 370  Q
    |||||| |||||||| |||||||||||| | || | |||||||| ||||| ||||||||||||||||    
T  27725567 ctatttgacaatattttgtactaaatagtggattgcggaacaattgtgatttgttcaaattctgcta 27725501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 33534632 - 33534685
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctat 298  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||  |||||||    
T  33534632 gaaaatagcggttggttcaaattctgctacgcaacagtgctatagcatcgctat 33534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 373
Target Start/End: Complemental strand, 6926446 - 6926331
Alignment:
Q  258 tgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaa-tattctgtactaaatagcgaatcgtggaacaatagtgatatg 356  Q
    ||||||| ||||||||| |  | ||||||||| |  |||| || ||||||||||||| |||| |||||||||||||  || || |||| ||| |||| ||    
T  6926446 tgttcaagttctgctactcaactgtgctatagcgctgctagagtcactatttcacaaatatt-tgtactaaatagcatattgtagaacgataatgatttg 6926348  T
Q  357 ttcaaattctgctatgc 373  Q
    |||||||||||||||||    
T  6926347 ttcaaattctgctatgc 6926331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 8928401 - 8928473
Alignment:
Q  305 tatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 377  Q
    ||||||| |||||| |||||||||||||| ||| | ||||||||| ||| ||||||||| | |||| ||||||    
T  8928401 tatttcagaatattttgtactaaatagcgtatcatcgaacaatagcgatttgttcaaatcccgctacgcaata 8928473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 11709522 - 11709459
Alignment:
Q  255 gtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatatt 318  Q
    |||||||||||||| | ||| |  ||||||||||||| | ||||||||||||||||| ||||||    
T  11709522 gtttgttcaaattccgatacacaacagtgctatagtggctctatagccactatttcataatatt 11709459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 31632209 - 31632320
Alignment:
Q  242 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgg 341  Q
    |||||||||||| ||||||||||| || ||||| |  || ||||||||   | | ||| || ||||||| |||||||  ||||||||||||| |||| ||    
T  31632209 gcggaaaatagcagtttgttcaaactcggctacacaacaatgctatagcacctccataaccgctatttcgcaatattacgtactaaatagcgtatcgggg 31632308  T
Q  342 aacaatagtgat 353  Q
    |||| |||||||    
T  31632309 aacagtagtgat 31632320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 34114411 - 34114360
Alignment:
Q  320 tgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctat 371  Q
    |||||||||||||| || |||||||||||| ||| ||||||| |||||||||    
T  34114411 tgtactaaatagcgtattgtggaacaatagcgatttgttcaagttctgctat 34114360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 42251599 - 42251677
Alignment:
Q  246 aaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtac 324  Q
    |||||||| ||||| ||||||||||| | ||  | ||||||| |||||||||||| ||| |||||||||| || |||||    
T  42251599 aaaatagcagtttgctcaaattctgcgatgcaactgtgctattgtgtcgctatagtcaccatttcacaatgttttgtac 42251677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 42253908 - 42253990
Alignment:
Q  249 atagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatag 331  Q
    ||||| ||||| ||||||||||  ||||  |||| |||| ||| |||||||| ||| |||||||||| || ||||||||||||    
T  42253908 atagcagtttgctcaaattctgtgacgcaacagttctattgtgccgctatagtcaccatttcacaatgttttgtactaaatag 42253990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 361
Target Start/End: Original strand, 40213830 - 40213946
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaa 343  Q
    ||||||||| |||||||| ||||| ||||||||  |||||||||||   |  |||||| || |||| |||| ||| ||||||| |||||| || |  |||    
T  40213830 ggaaaatagtggtttgtttaaattttgctacgcaacagtgctatagcaccaatatagctaccatttgacaacattttgtactacatagcgtattg-cgaa 40213928  T
Q  344 caatagtgatatgttcaa 361  Q
    |||||||||| |||||||    
T  40213929 caatagtgatttgttcaa 40213946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 6586646 - 6586614
Alignment:
Q  236 tggatagcggaaaatagcggtttgttcaaattc 268  Q
    ||||| |||||||||||||||||||||||||||    
T  6586646 tggattgcggaaaatagcggtttgttcaaattc 6586614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 384
Target Start/End: Complemental strand, 36060389 - 36060245
Alignment:
Q  243 cggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccac---tatttcacaatattctgtactaaatagcgaatcgt 339  Q
    |||||||||| |||||||||||||| ||||| ||  |||| |||||| | |  ||||||| |   |||||||||||||| ||||||||||| || || ||    
T  36060389 cggaaaatagtggtttgttcaaattttgctatgcaacagtactatagcgcctatatagccgcctctatttcacaatattttgtactaaataacgtattgt 36060290  T
Q  340 ggaacaatagtgatatgttcaaattctgctatgcaatagtgttat 384  Q
    |||||||  | ||| |||||||||||||| ||||||||| |||||    
T  36060289 ggaacaaatgcgatttgttcaaattctgcaatgcaatagagttat 36060245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 378
Target Start/End: Complemental strand, 5033453 - 5033317
Alignment:
Q  242 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtgg 341  Q
    |||||||||||| |||||||||||||| |||||||  ||  ||||||| | | ||||| |  | ||||||| ||||| |||||||||||| | |||  ||    
T  5033453 gcggaaaatagcagtttgttcaaattccgctacgcaacacagctatagcgccactataactgcaatttcacgatattatgtactaaatagtgtatcacgg 5033354  T
Q  342 aacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    |||||||||  | ||||||||||  ||||||||||||    
T  5033353 aacaatagttgtttgttcaaatttcgctatgcaatag 5033317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 364
Target Start/End: Complemental strand, 7877884 - 7877774
Alignment:
Q  254 ggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgat 353  Q
    |||||||||||||||  |||| |  ||||||||||| ||| | |||||| |||||| | || |  ||||||||||||||| || ||||||||||||||||    
T  7877884 ggtttgttcaaattccactacactacagtgctatagcgtcccaatagcctctatttgataacaaactgtactaaatagcgtattgtggaacaatagtgat 7877785  T
Q  354 atgttcaaatt 364  Q
     ||||| ||||    
T  7877784 ttgttccaatt 7877774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 2082120 - 2082056
Alignment:
Q  244 ggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatt 308  Q
    ||||||||||||||||||||||||||||||| |  | |||||||||||  ||| |||||||||||    
T  2082120 ggaaaatagcggtttgttcaaattctgctacactactgtgctatagtgctgctttagccactatt 2082056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 29208328 - 29208263
Alignment:
Q  301 ccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattct 366  Q
    ||||||||||| || ||| ||||||||| |||| ||||||||||||||  ||| ||||||||||||    
T  29208328 ccactatttcaaaacattttgtactaaacagcgtatcgtggaacaataacgatttgttcaaattct 29208263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 162970 - 162890
Alignment:
Q  297 atagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 377  Q
    |||||| ||||||||||||||| |||||||||||||| ||||  ||| ||||   || ||||||||||||| | |||||||    
T  162970 atagcctctatttcacaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattctgttttgcaata 162890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 2990979 - 2991043
Alignment:
Q  300 gccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaatt 364  Q
    |||||||||| |||| ||| |||||||||||||| |||||||||||| ||  || ||||||||||    
T  2990979 gccactatttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatt 2991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 21011408 - 21011361
Alignment:
Q  242 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatag 289  Q
    |||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  21011408 gcggaaaatagcggtttgttcaaactctgctacacgatagtgctatag 21011361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 385
Target Start/End: Complemental strand, 54084369 - 54084291
Alignment:
Q  307 tttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    |||||||||||| || ||||||||||| || |||||||| ||    | ||||||||||| |||||||||||||| ||||    
T  54084369 tttcacaatattttgcactaaatagcgtattgtggaacattatcagtttgttcaaattccgctatgcaatagtgctata 54084291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 7277106 - 7277069
Alignment:
Q  340 ggaacaatagtgatatgttcaaattctgctatgcaata 377  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  7277106 ggaacaatagtgatttgttcaaattccgctatgcaata 7277069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 14794295 - 14794336
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaaca 345  Q
    |||||| |||||||| |||||||||||||| |||||||||||    
T  14794295 ctatttgacaatattttgtactaaatagcgtatcgtggaaca 14794336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 50061821 - 50061906
Alignment:
Q  247 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagc 332  Q
    |||| ||||||||||||||||| ||||| |   |||||||||||   |||||||||  || ||||| |||||| ||||||||||||    
T  50061821 aaattgcggtttgttcaaattccgctacacaatagtgctatagtactgctatagccggtacttcaccatattcggtactaaatagc 50061906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 43381260 - 43381172
Alignment:
Q  280 agtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgc 368  Q
    |||| |||||||||||||||||  |||||| |||| ||| |||| ||||| ||  |||| |||| ||||| ||| | ||||||||||||    
T  43381260 agtgatatagtgtcgctatagcttctatttgacaacattttgtattaaattgcatatcgcggaataatagcgatttattcaaattctgc 43381172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 375
Target Start/End: Complemental strand, 11530108 - 11530018
Alignment:
Q  285 tatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaa 375  Q
    ||||||| | |||||||| ||||||||||||||| |||||||||||| | ||||  ||||||||||||| ||||||||||  |||||||||    
T  11530108 tatagtgccactatagccgctatttcacaatattatgtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttcgctatgcaa 11530018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 39597637 - 39597566
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaa 375  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||| ||| | || |||||| |||| ||||    
T  39597637 ctatttcacaatattttgtactaaatagcgtatcgcggaacaatagcgatttatttaaattccgctacgcaa 39597566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 28804415 - 28804329
Alignment:
Q  285 tatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctat 371  Q
    ||||||||| ||||||||  ||||| |||||| | |||||||||||||  ||  || |||||||| ||| |||||||||||||||||    
T  28804415 tatagtgtcactatagccgttatttgacaatactttgtactaaatagcttattctgaaacaatagcgatttgttcaaattctgctat 28804329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 16866716 - 16866663
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctat 298  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||  |||||||    
T  16866716 gaaaatagcggttggttcaaattctgctacgcaacagtgctatagcatcgctat 16866663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 39597702 - 39597642
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaatt 364  Q
    ||||||||||||||| ||| |||||||| | || |||||||||||||||| | ||||||||    
T  39597702 ctatttcacaatattttgtcctaaatagtgtattgtggaacaatagtgatttattcaaatt 39597642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 18264879 - 18264808
Alignment:
Q  294 gctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattc 365  Q
    ||||||||||||||||  ||||||| |||||||||||  | || ||| |||||| ||||| |||||||||||    
T  18264879 gctatagccactatttagcaatattttgtactaaatattgtatagtgcaacaatggtgatttgttcaaattc 18264808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 33623691 - 33623741
Alignment:
Q  320 tgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgcta 370  Q
    |||||||||||||  || |||||||||||||||| |||| |||||||||||    
T  33623691 tgtactaaatagcatatagtggaacaatagtgatttgttaaaattctgcta 33623741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 35921571 - 35921517
Alignment:
Q  295 ctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaatag 349  Q
    ||||| |||||||||||||| ||| | ||||||| |||| |||||||||||||||    
T  35921571 ctatatccactatttcacaacattttatactaaacagcgtatcgtggaacaatag 35921517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 42035571 - 42035506
Alignment:
Q  305 tatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctat 371  Q
    ||||| ||||||||  ||||||||||| | ||||||||||| ||||||| ||||||||||| |||||    
T  42035571 tatttgacaatatttagtactaaatag-gtatcgtggaacagtagtgatttgttcaaattccgctat 42035506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 18569542 - 18569497
Alignment:
Q  242 gcggaaaatagcggtttgttcaaattctgctacgcggcagtgctat 287  Q
    |||| |||||||||||||||||||||||||||| |  |||||||||    
T  18569542 gcgggaaatagcggtttgttcaaattctgctacactacagtgctat 18569497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 370
Target Start/End: Complemental strand, 1310249 - 1310124
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaac 344  Q
    |||||||| |||||||||| ||  ||||| ||  ||||||||||   ||||||||||| ||||||||||||||  |||||||||||| | |||  |||||    
T  1310249 gaaaatagtggtttgttcatatcatgctatgcaacagtgctatacaatcgctatagccgctatttcacaatatattgtactaaatagtgtatcaaggaac 1310150  T
Q  345 aatagtgatatgttcaaattctgcta 370  Q
    |||||  || ||||||||||||||||    
T  1310149 aatagcaatttgttcaaattctgcta 1310124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 42822711 - 42822618
Alignment:
Q  238 gatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatag 331  Q
    |||||||||||||| | ||||||||||||||  ||| ||  ||||||||||| | ||||||||||||||||||||| |||| ||| ||||||||    
T  42822711 gatagcggaaaatatcagtttgttcaaattccactatgcaacagtgctatagcgccgctatagccactatttcacagtattttgtcctaaatag 42822618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 9112482 - 9112405
Alignment:
Q  300 gccactatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaata 377  Q
    |||||||||||||||||||||||||||||||||  ||||  ||||||||||||| || | ||||||  ||||||||||    
T  9112482 gccactatttcacaatattctgtactaaatagcatatcgcagaacaatagtgatctggttaaattccactatgcaata 9112405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 365
Target Start/End: Original strand, 10354756 - 10354883
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 336  Q
    |||| |||||||||||  ||||||||||||||  ||||||   |||||||||| | ||||||| |   ||||||| |||||| ||| |||||||| | ||    
T  10354756 ggatcgcggaaaatagatgtttgttcaaattccactacgcaatagtgctatagagccgctataactgttatttcataatattttgtgctaaatag-gtat 10354854  T
Q  337 cgtggaacaatagtgatatgttcaaattc 365  Q
    ||||||||||| ||||| |||||||||||    
T  10354855 cgtggaacaatggtgatttgttcaaattc 10354883  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 331
Target Start/End: Original strand, 2722146 - 2722232
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatag 331  Q
    |||||||||| |||| ||||||||||| ||||   ||||||||||  |||| ||||||||||||  |||||||| ||||||||||||    
T  2722146 gaaaatagcgatttgatcaaattctgcaacgcaaaagtgctatagcatcgcaatagccactattcgacaatattttgtactaaatag 2722232  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 7108314 - 7108228
Alignment:
Q  222 agtgttgttcatcctggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatt 308  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||||| ||| ||  |  |||||||||| | ||||||| ||||||    
T  7108314 agtgttgttaatcgtggatagcggaaaatagcagtttgttcaaattctactatgcaacgatgctatagtgccactatagcaactatt 7108228  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 16900883 - 16901018
Alignment:
Q  243 cggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgcta-tagccactatttcacaatattctgtactaaatagcgaatcgtgg 341  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||| | ||||| ||||   || || |||| ||| |||||||||||| |  |    |    
T  16900883 cggaaaatagcggtttgctcaaattctgctacgcacgagtgctatagcgccgctattagctggtactt-acaaaattttgtactaaatagtgtttaacag 16900981  T
Q  342 aacaatagtgatatgttcaaattctgctatgcaatag 378  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  16900982 aacaatagtgatttgttcaaattccgctatgcaatag 16901018  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 43935150 - 43935226
Alignment:
Q  304 ctatttcacaatattctgtactaaatagcgaatcgtggaacaatagtgatatgttcaaattctgctatgcaatagtg 380  Q
    ||||||||||||||| ||| ||||| |||| |||  ||||||||||| || |||||||||||  |||||||||||||    
T  43935150 ctatttcacaatattttgtgctaaacagcgtatcacggaacaatagtcatttgttcaaattccactatgcaatagtg 43935226  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 21227052 - 21226911
Alignment:
Q  237 ggatagcggaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaat 336  Q
    ||||||||||||||||||| ||  ||||||||||||  ||  ||||| ||||| |   |||||||  |||||| |||| ||| |||||| ||||||| ||    
T  21227052 ggatagcggaaaatagcgggtttctcaaattctgctttgcaacagtgatatagcgctactatagcagctatttgacaacattttgtactgaatagcgtat 21226953  T
Q  337 cgtggaacaatagtgatatgttcaaattctgctatgcaatag 378  Q
     | ||||||||||   | ||||||||||| ||||||| ||||    
T  21226952 ggaggaacaatagctttttgttcaaattccgctatgctatag 21226911  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 30580440 - 30580476
Alignment:
Q  336 tcgtggaacaatagtgatatgttcaaattctgctatg 372  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30580440 tcgtggaacaatagtgatttgttcaaattctgctatg 30580476  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 41686218 - 41686301
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaa 328  Q
    ||||| |||||||||||||||||  |||| ||  ||||||||||  | |||||||||  ||| ||||||||||| |||||||||    
T  41686218 gaaaagagcggtttgttcaaatttcgctatgcaacagtgctataacgccgctatagcagctacttcacaatattttgtactaaa 41686301  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 365
Target Start/End: Original strand, 8284292 - 8284410
Alignment:
Q  247 aaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaa 346  Q
    ||||||| ||||||||| |||| || |||| |||||| ||||| | | ||||| | |||||   |||| | | ||||||||| |||| |||| |||||||    
T  8284292 aaatagcagtttgttcatattccgcaacgctgcagtgttatagagccactataactactatccaacaacactttgtactaaaaagcgtatcgcggaacaa 8284391  T
Q  347 tagtgatatgttcaaattc 365  Q
    | ||||| |||||||||||    
T  8284392 tggtgatttgttcaaattc 8284410  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 41931132 - 41931066
Alignment:
Q  282 tgctatagtgtcgctatagccactatttcacaatattctgtactaaatagcgaatcgtggaacaata 348  Q
    |||||||||| ||||| ||||  | ||| |||||||| |||||||||||||  ||||||||||||||    
T  41931132 tgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaata 41931066  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 11674088 - 11674048
Alignment:
Q  345 aatagtgatatgttcaaattctgctatgcaatagtgttata 385  Q
    ||||||||| ||||||||||||||||||| |||||| ||||    
T  11674088 aatagtgatttgttcaaattctgctatgctatagtgctata 11674048  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 10620 - 10702
Alignment:
Q  245 gaaaatagcggtttgttcaaattctgctacgcggcagtgctatagtgtcgctatagccactatttcacaatattctgtactaa 327  Q
    ||||||||||||||||||||||||||||| ||  ||||  |||| || | |||||||| ||| || |||||||| | ||||||    
T  10620 gaaaatagcggtttgttcaaattctgctatgcaacagtattataatgcctctatagcctctactttacaatattttatactaa 10702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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