View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_low_15 (Length: 370)
Name: NF21620_low_15
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 6745334 - 6745675
Alignment:
| Q |
10 |
gcacagacgggaagaccgggtgtaataatatctaatcatgtatcatacattgatattttgtatcacatgtctaactcattcccaagttttgttgctaagg |
109 |
Q |
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| T |
6745334 |
gcacagacgggaagacccggtgtaataatatctaatcatgtatcatacattgatattttgtatcacatgtctaactcattcccaagttttgttgctaagg |
6745433 |
T |
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| Q |
110 |
tttgtgttgttttgacaagtttttcacaccctccttcagtttatcttaaaagcatgtttcattaacagannnnnnnnnctttactaacgattgtccttca |
209 |
Q |
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| T |
6745434 |
tttgtgttgttttgacaagtttttcacaccctccttcagtttatcttaaaagcatgtttcattaacaga-atttttttctttactaacgattgtccttca |
6745532 |
T |
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| Q |
210 |
tctgctgtgcttcatttcaatcttggatctcgtcaatgaagagatcagtgggtaaaattcctctagttggtctcatcaggtctgtttctctgtcttattt |
309 |
Q |
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| T |
6745533 |
tctgctgtgcttcatttcaatcttggatctcgtcaatgaagagatcagtgggtaaaattcctctagttggtctcatcaggtctgtttctctgtcttattt |
6745632 |
T |
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| Q |
310 |
gtttaattacgagttatattttctttatacgcatgattattca |
352 |
Q |
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| T |
6745633 |
gtttaattacgagttatattttctttatacgcatgattattca |
6745675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 42388108 - 42388208
Alignment:
| Q |
14 |
agacgggaagaccgggtgtaataatatctaatcatgtatcatacattgatattttgtatcacatgtctaactcattcccaagttttgttgctaaggtttg |
113 |
Q |
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||||||||||||| |||||||||||||||||||| || |||||| | ||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |
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| T |
42388108 |
agacgggaagacctggtgtaataatatctaatcacgtgtcatacttggatattttgtatcacatgtcttcctcgttcccaagctttgttgctaaggtttg |
42388207 |
T |
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| Q |
114 |
t |
114 |
Q |
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| T |
42388208 |
t |
42388208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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