View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_low_18 (Length: 324)
Name: NF21620_low_18
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 8344183 - 8344362
Alignment:
| Q |
45 |
tgaaaatctgagttgttttgttttctaggtcattatagatgatctcctccaccactctccttgtgctccctttcttttacctcccttccatggcatatag |
144 |
Q |
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| T |
8344183 |
tgaaaatctgagttgttttgttttctaggtcattatagatgatctcctccaccactctccatgtgctccctttcttttacctcccttccatggcatatag |
8344282 |
T |
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| Q |
145 |
cacaaccacctggagaaaaagtaaaacattaggaattgaagcatacccttttggcttttttcttacacattcttttaatg |
224 |
Q |
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| T |
8344283 |
cacaaccacctgaagaaaaagtaaaacattagaaattgaagcatacccttttggcttttttcttacacattcttttaatg |
8344362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 8346926 - 8347111
Alignment:
| Q |
40 |
cattatgaaaatctgagttgttttgttttctaggtcattatagatgatctcctccaccactctccttgtgctccctttcttttacctcccttccatggca |
139 |
Q |
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| T |
8346926 |
cattatgaaaatctgagttgttttgttttctaggtcattatagatgatctcctccaccactctcaatgtgctccctttcttttacctcccttccatggca |
8347025 |
T |
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| Q |
140 |
tatagcacaaccacctggagaaaaagtaaaacattaggaattgaagcatacccttttggc-ttttttcttacacattcttttaatg |
224 |
Q |
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| T |
8347026 |
tatagcacaacgacctagagaaaaagtaaaacattaggaattgaagcatacccttttggctttttttcttacacattcttttaatg |
8347111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 8330415 - 8330598
Alignment:
| Q |
40 |
cattatgaaaatctgagttgttttgttttctaggtcattatagatgatctcctccaccactctccttgtgctccctttcttttacctcccttccatggca |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8330415 |
cattatgaaaatctgagttgttttgttttctaggtcattatagatgatctcttccaccactctccctgtgctccctttcttttacctcccttccatggca |
8330514 |
T |
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| Q |
140 |
tatagcacaaccacctggagaaaaagtaaaacattaggaattgaagcatacccttttggcttttttcttacacattcttttaatg |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || ||||||||||| |||||||||||| |
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| T |
8330515 |
tatagcacaaccacctggagaaaaagtaaaacattaggaattgaaccataccttttaagc-tttttcttacaaattcttttaatg |
8330598 |
T |
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