View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21620_low_20 (Length: 315)
Name: NF21620_low_20
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 35431548 - 35431262
Alignment:
| Q |
15 |
aaaaacaataataacaaatattgtatttgtattttaaagtgtgccaattattccaagagacnnnnnnnnttgcagaagctctgccaagagaggaagaata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35431548 |
aaaaacaataataacaaatattgtatttgtattttaaagtgtgccaattattctaagagacaaaaaaaattgcagaagctctgccaagagaggaagaata |
35431449 |
T |
|
| Q |
115 |
gtctgttaaacatatgttgcatacaattaattcnnnnnnngatctgtgcaaatatagatgtataccaaaaagaccttaccttatccacagcttcttttac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35431448 |
gtctgttaaacatatgttgcatacaattaattcaaaaaaagatcagtgcaaatatagatgtataccaaaaagaccttaccttatccacagcttcttttac |
35431349 |
T |
|
| Q |
215 |
cttggtaccaattgtgacataagcagtactaggtggaccaattcatctacacattttaataacacaataatgatcccagagtataat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35431348 |
cttggtaccaattgtgacataagcagtactaggtggaccaattcatctacacattttaacaacacaataatgatcccagagtataat |
35431262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University