View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_low_26 (Length: 250)
Name: NF21620_low_26
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 53424005 - 53423786
Alignment:
| Q |
12 |
tccctactacacaagctaaactatatttaaagaaaatgtttatttgaaattttgcttttgaatccgagattgaaatcaaaagtgagagatgatcactagt |
111 |
Q |
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| T |
53424005 |
tccctactacacaagctaa-ctatatttaaagtaaatgtttatttgaaattttgcttttgaatccgagattgaaatcaacagtgagagatgatcactagt |
53423907 |
T |
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| Q |
112 |
taattatattgtattttttgcatataatcaatctgaagcaacccagtggcaacaattcttgcaacaattacagtcgtaggttataaacctgcacctatgg |
211 |
Q |
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| T |
53423906 |
taattatattgtattttttgcatataatcaatctgaagcaatccagtggcaacaattcttgcaacgattacagtcgtaggttataaacctgcacctatgg |
53423807 |
T |
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| Q |
212 |
ttgcattcttttcatctagag |
232 |
Q |
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| T |
53423806 |
ttgcattcttttcatctagag |
53423786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 225
Target Start/End: Original strand, 48374198 - 48374314
Alignment:
| Q |
108 |
tagttaattatattgtattttttgcatataatcaatctgaagcaacccagtggcaacaattcttgcaacaattacagtcgtaggttataaacctgcacct |
207 |
Q |
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| T |
48374198 |
tagttaattttattgtattttt-gcataaaattaatctaaagcaatccagtagcaacaattctaccaacagtcacagtcatagattataagcctgcacct |
48374296 |
T |
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| Q |
208 |
atggttgcattcttttca |
225 |
Q |
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| T |
48374297 |
atggtggcaatcttttca |
48374314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 53308680 - 53308557
Alignment:
| Q |
101 |
tgatcactagttaattatattgtattttttgcatataatcaatctgaagcaacccagtggcaacaattcttgcaacaattacagtcgtaggttataaacc |
200 |
Q |
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| T |
53308680 |
tgatgactagttaatttcattgtattttt-gcatttaattattttgaagcaatccggtggcaacaattctaccaacagttacaatcatagattataagcc |
53308582 |
T |
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| Q |
201 |
tgcacctatggttgcattcttttca |
225 |
Q |
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| T |
53308581 |
tgcacctatggtggcaaccttttca |
53308557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 53431537 - 53431438
Alignment:
| Q |
126 |
tttttgcatataatcaatctgaagcaacccagtggcaacaattcttgcaacaattacagtcgtaggttataaacctgcacctatggttgcattcttttca |
225 |
Q |
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| T |
53431537 |
tttttgcatatgattaatctcaaggaatccagtagcaacaattctaccaacagttacggtcatagattctaagcctgcacctatggcggcattcttttca |
53431438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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