View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_low_27 (Length: 249)
Name: NF21620_low_27
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 39305819 - 39305572
Alignment:
| Q |
1 |
attctgctatgcaatagtgttatagtcttgctacatccgtaatttaacaactctgctgcaaatactgactttggcactggggctaaagagcaagtatctt |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39305819 |
attctgctatgcaatagtgctatagtcttgctacatccgtaatttaacaactctgctgcaaatactgactttggcactgtggctaaagagcaagtatctt |
39305720 |
T |
|
| Q |
101 |
gaaggtggttcagtcaaatctatgggatgctgtcatagtgctaataagtcagcttaggctaacaacatggaccctccctttcggtggttcagctaagctt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305719 |
gaaggtggttcagtcaaatctatgggatgctgtcatagtgctaataagtcagctgaggctaacaacatggaccctccctttcggtggttcagctaagctt |
39305620 |
T |
|
| Q |
201 |
caccattaactgttttagtgtttaagttaaagctcagtttcatctctc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39305619 |
caccattaactgttttagtgtttaagttaaagctcagtttcttctctc |
39305572 |
T |
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