View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21620_low_28 (Length: 248)
Name: NF21620_low_28
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_28 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 23915392 - 23915631
Alignment:
| Q |
9 |
ttattctcaagggaagttaattgaggctgttgataaaagattgaatggtgaatttgatgaagatgaaatgaagaagatgttactattagggttaagttgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23915392 |
ttattctcaagggaagttaattgaggctgttgataagagattgaatggtgaatttgatgaagttgaaatgaagaagatgttactattagggttaagttgt |
23915491 |
T |
|
| Q |
109 |
gcaaatccaaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagctttgcctcttgttgtgcctaaagtgaaaccttgcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23915492 |
gcaaatccaaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagctttgcctcttgttgtgcctaaagtgaaaccttgcc |
23915591 |
T |
|
| Q |
209 |
ttagtttctcttctggattgttattgagtcttgatgaaat |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23915592 |
ttagtttctcttctggattgttattgagtcttgatgaaat |
23915631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 1225553 - 1225710
Alignment:
| Q |
17 |
aagggaagttaattgaggctgttgataaaagattgaatggtgaatttgatgaagatgaaatgaagaagatgttactattagggttaagttgtgcaaatcc |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||||||||||||| || ||||| ||||||| |||| | || | |||||||| || ||||| ||||| |
|
|
| T |
1225553 |
aagggaagataattgaggctgttgataagaggttgaatggtgaattcgaggaagaggaaatgaggaagcttttgttgttagggttgagctgtgctaatcc |
1225652 |
T |
|
| Q |
117 |
aaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagct |
174 |
Q |
| |
|
|||||| || ||||||| | |||||| | |||||||| ||||| |||||||||||| |
|
|
| T |
1225653 |
tgatagtgctgcaaggcctacaatgagatgggttttgcagattctcaacaatgaagct |
1225710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 41964111 - 41964275
Alignment:
| Q |
10 |
tattctcaagggaagttaattgaggctgttgataaaagattgaatggtgaatttgatgaagatgaaatgaagaagatgttactattagggttaagttgtg |
109 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| || |||||||||||||| || ||||| ||||||| |||| | || | |||||||| || |||| |
|
|
| T |
41964111 |
tattctgaagggaagataattgaggctgttgataagaggttgaatggtgaattcgaggaagaggaaatgacgaagcttttgttgttagggttgagctgtg |
41964210 |
T |
|
| Q |
110 |
caaatccaaatagtgatgaaaggccttctatgagaagagttttgcaaattcttaacaatgaagct |
174 |
Q |
| |
|
| ||||| |||||| || ||||||| | |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
41964211 |
ctaatcctgatagtgctgcaaggcctacaatgagaagggttttgcagattctcaacaatgaagct |
41964275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University