View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21620_low_4 (Length: 562)

Name: NF21620_low_4
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21620_low_4
NF21620_low_4
[»] chr4 (3 HSPs)
chr4 (133-546)||(37783533-37783946)
chr4 (1-133)||(37783971-37784103)
chr4 (180-233)||(55827307-55827360)
[»] chr7 (3 HSPs)
chr7 (145-223)||(5026141-5026220)
chr7 (193-234)||(14773460-14773501)
chr7 (193-234)||(15223912-15223953)
[»] chr3 (1 HSPs)
chr3 (187-233)||(46829115-46829161)
[»] chr5 (3 HSPs)
chr5 (184-233)||(34252787-34252836)
chr5 (187-233)||(34252708-34252754)
chr5 (187-231)||(9956571-9956615)
[»] chr2 (3 HSPs)
chr2 (144-236)||(24037572-24037665)
chr2 (184-233)||(10459336-10459385)
chr2 (180-233)||(29291130-29291183)
[»] chr1 (2 HSPs)
chr1 (198-235)||(27528362-27528399)
chr1 (167-233)||(31784788-31784854)
[»] chr6 (5 HSPs)
chr6 (167-235)||(9675751-9675819)
chr6 (141-236)||(33822276-33822372)
chr6 (133-235)||(30531196-30531299)
chr6 (167-233)||(31323867-31323933)
chr6 (143-218)||(31323820-31323896)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 133 - 546
Target Start/End: Complemental strand, 37783946 - 37783533
Alignment:
Q  133 aaaacgagttaacataagttgatgtatgcggtacaaattggtactagatatatcaacttctgttaaccaatttttgcttacattttaggacgaagggagt 232  Q
    |||||||||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  37783946 aaaacgagttaacataagttgatgtatgtggtataaatttatactagatatatcaacttctgttaaccaatttttgtttacattttaggaccaagggagt 37783847  T
Q  233 acatatttttggcaaaatcatttttgtcagaggatttcacaatattctttacattcaaagtaaattatcacttcatctcaaaaaagaattttgcatacaa 332  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37783846 acatatttttggcaaaatcatttttgtcataggatttcaaaatattctttaaattcaaagtaaattatcacttcatctcaaaaaagaattttgcatacaa 37783747  T
Q  333 caaactctccgtgtcttatgtttatttctcgcactttcatatatgtgtatatacgtatctatactaatatattagtgtaaaatgataaggatataatttc 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37783746 caaactctccgtgtcttatgtttatttctcgcactttcatatatgtgtatatacgtatctatactaatatattagtgtaaaatgataaggatataatttc 37783647  T
Q  433 tctttcatttgttaggattgggtataacgaactcaggtttattctccatgttgatttctaaagatgatgatttattcttctttttcatttctttgttctt 532  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37783646 tctttcatttgttaggactgggtataacgaactcaggtttattctccatgttgatttctaaagatgatgatttattcttctttttcatttctttgttctt 37783547  T
Q  533 actccaaagcactg 546  Q
    ||||||||| ||||    
T  37783546 actccaaagtactg 37783533  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 37784103 - 37783971
Alignment:
Q  1 tatgaataatgaaaaatttcttacgtaaagaagggactagatgtagctatcatattaatagtaccctagtacaaatttatatgtgcttctgctctcagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37784103 tatgaataatgaaaaatttcttacgtaaagaagggactagatgtagctatcatattaatagtaccctagtacaaatttatatgtgcttctgctctcagct 37784004  T
Q  101 tgctgatctatgttaatatttgtttttatctta 133  Q
    |||||||||||||||||||||||||||||||||    
T  37784003 tgctgatctatgttaatatttgtttttatctta 37783971  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 55827307 - 55827360
Alignment:
Q  180 atatatcaacttctgttaaccaatttttgcttacattttaggacgaagggagta 233  Q
    |||||| ||||| |||| ||||||||||||||| ||||| ||||||| ||||||    
T  55827307 atatattaacttttgttgaccaatttttgcttatattttgggacgaatggagta 55827360  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 5026220 - 5026141
Alignment:
Q  145 cataagttgatgtatgcggtacaaattg-gtactagatatatcaacttctgttaaccaatttttgcttacattttaggac 223  Q
    |||||||||||||||  ||||||||||  | |||| |||||| ||||| |||||||||||||||||||| ||||| ||||    
T  5026220 cataagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggac 5026141  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 14773501 - 14773460
Alignment:
Q  193 tgttaaccaatttttgcttacattttaggacgaagggagtac 234  Q
    |||| |||||||||| ||||||||||||||||||| ||||||    
T  14773501 tgttcaccaatttttacttacattttaggacgaagagagtac 14773460  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 15223953 - 15223912
Alignment:
Q  193 tgttaaccaatttttgcttacattttaggacgaagggagtac 234  Q
    |||| |||||||||| ||||||||||||||||||| ||||||    
T  15223953 tgttcaccaatttttacttacattttaggacgaagagagtac 15223912  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 46829115 - 46829161
Alignment:
Q  187 aacttctgttaaccaatttttgcttacattttaggacgaagggagta 233  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  46829115 aacttttgttgaccaatttttgcttatattttaggacgaagggagta 46829161  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 34252787 - 34252836
Alignment:
Q  184 atcaacttctgttaaccaatttttgcttacattttaggacgaagggagta 233  Q
    |||||||| |||||||| ||||||||||||||||| ||||| ||||||||    
T  34252787 atcaacttatgttaacccatttttgcttacattttgggacggagggagta 34252836  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 34252754 - 34252708
Alignment:
Q  187 aacttctgttaaccaatttttgcttacattttaggacgaagggagta 233  Q
    ||||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  34252754 aacttttgttgaccaatttttgcttacattttgggacggagggagta 34252708  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 9956571 - 9956615
Alignment:
Q  187 aacttctgttaaccaatttttgcttacattttaggacgaagggag 231  Q
    ||||| ||||||||||||||| |||||||||| ||||| ||||||    
T  9956571 aacttttgttaaccaatttttacttacattttgggacggagggag 9956615  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 24037665 - 24037572
Alignment:
Q  144 acataagttgatgtatgcggtac-aaattggtactagatatatcaacttctgttaaccaatttttgcttacattttaggacgaagggagtacat 236  Q
    ||||||||||||||||   || | ||||| |||| | |||||||||||| |||| ||  ||||||||||||||||||||||| | |||||||||    
T  24037665 acataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggacggatggagtacat 24037572  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 10459336 - 10459385
Alignment:
Q  184 atcaacttctgttaaccaatttttgcttacattttaggacgaagggagta 233  Q
    |||||||| |||| |||||| |||||||||||||| ||||| ||||||||    
T  10459336 atcaacttatgttgaccaatctttgcttacattttgggacggagggagta 10459385  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 29291130 - 29291183
Alignment:
Q  180 atatatcaacttctgttaaccaatttttgcttacattttaggacgaagggagta 233  Q
    |||||| ||||| | || ||||||||||||||||||||| ||||| ||||||||    
T  29291130 atatattaacttttattgaccaatttttgcttacattttgggacggagggagta 29291183  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 27528362 - 27528399
Alignment:
Q  198 accaatttttgcttacattttaggacgaagggagtaca 235  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  27528362 accaatttttgcttacattttcggacgaagggagtaca 27528399  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 31784788 - 31784854
Alignment:
Q  167 aaattggtactagatatatcaacttctgttaaccaatttttgcttacattttaggacgaagggagta 233  Q
    ||||| ||| |||||| |||||||| |||| || |||||||||||||||||| ||||  ||||||||    
T  31784788 aaatttgtattagatacatcaacttatgttgacaaatttttgcttacattttgggacagagggagta 31784854  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 9675819 - 9675751
Alignment:
Q  167 aaattggtactagatatatcaacttctgttaaccaatttttgcttacattttaggacgaagggagtaca 235  Q
    ||||| |||| ||||  |||||||| |||| |||||||||||||||||||||  |||| ||||||||||    
T  9675819 aaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggagggagtaca 9675751  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 33822372 - 33822276
Alignment:
Q  141 ttaacataagttgatgtatgcggtacaaattg-gtactagatatatcaacttctgttaaccaatttttgcttacattttaggacgaagggagtacat 236  Q
    |||| ||||||||||||||  | ||||||||  | |||| |||||| ||||| |||||| ||||||||  ||||||||||||||| | |||||||||    
T  33822372 ttaatataagttgatgtatttgatacaaattttgaactaaatatattaacttttgttaatcaatttttatttacattttaggacggatggagtacat 33822276  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 30531196 - 30531299
Alignment:
Q  133 aaaacgagttaacataagttgatgtatgcggtacaaa-ttggtactagatatatcaacttctgttaaccaatttttgcttacattttaggacgaagggag 231  Q
    |||||| || |||||||||||||||||  ||| |||| || |||| | ||| |||||||| |||| |   ||||||||||||||||| ||||| ||||||    
T  30531196 aaaacgggtcaacataagttgatgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggacggagggag 30531295  T
Q  232 taca 235  Q
    ||||    
T  30531296 taca 30531299  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 31323867 - 31323933
Alignment:
Q  167 aaattggtactagatatatcaacttctgttaaccaatttttgcttacattttaggacgaagggagta 233  Q
    ||||| |||| ||||| |||||||| |||| ||| ||||||||||||||||| ||||  ||||||||    
T  31323867 aaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttgggacagagggagta 31323933  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 31323896 - 31323820
Alignment:
Q  143 aacataagttgatgtatgcggtacaaattg-gtactagatatatcaacttctgttaaccaatttttgcttacatttt 218  Q
    |||||||||||||||||  ||||||||||  | || | ||| || ||||| |||| |||||||||||||||||||||    
T  31323896 aacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacatttt 31323820  T

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