View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21620_low_6 (Length: 509)
Name: NF21620_low_6
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 31259215 - 31258823
Alignment:
| Q |
1 |
caaaaacactacatattataacaagagaatttctacgatacatttgttgaatccacatgtaataatacatttgatcttcaaattaataggttataataaa |
100 |
Q |
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| T |
31259215 |
caaacacactacatattataacaagagaatttctactatacatttgttgaatccacatgtaataatacatttgatcttcaaattaataggttataataaa |
31259116 |
T |
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| Q |
101 |
tgagttttgcagaaatataataatacatacttatttgtgagacttatttagtaaatatttataaggtgctagattgaagagattgtgtacttttctttta |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
31259115 |
tgagttttgcagaaatataataatacataattatttgtgagactgatttagtaaatatttatacgatgctagattggagagattgtgtacttttctttta |
31259016 |
T |
|
| Q |
201 |
aaaggggatcaatagtcttatccacttctatctacccctcatgactcgaacctacaatccttttgagtgtaggtgaagtgtcttaccaactaaattataa |
300 |
Q |
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| T |
31259015 |
aaaggggaccaatagtcttatccacttctatctacccctcatgactcgaacctacaatccttttgagtgtaggtgaagtgtcttaccaactaaattat-a |
31258917 |
T |
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| Q |
301 |
nnnnnnnnnnnnnnacaaatctatagc----tttgttatcatcttgaaacttgatagattttgtacttgttaaataataacattaaacaattat |
390 |
Q |
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| T |
31258916 |
gtgtttttttttttacaaacctatagcttaatttgttatcatcttgaaacttgagagattgcgtacttgttaaataataacattaaacaattat |
31258823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 429 - 509
Target Start/End: Complemental strand, 31258774 - 31258694
Alignment:
| Q |
429 |
cctattgcaagtagacatccatcaattcagacacatttactgtttttgacaaataattgaatattatgacgtttgtttgtt |
509 |
Q |
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|||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31258774 |
cctattgcaagtggccatgcatcaattcagacacatttactgtttttgacaaataattgaatattatgacgtttgtttgtt |
31258694 |
T |
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