View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21620_low_8 (Length: 459)
Name: NF21620_low_8
Description: NF21620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21620_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 429
Target Start/End: Complemental strand, 15165197 - 15164790
Alignment:
| Q |
22 |
gttccaatgcttaaacactacctttaaatttcttaatttcagttgcaaacgtaacataccaaaaccacggacatttttggaccaagagtcaattaccagc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
15165197 |
gttccaatgcttaaacactacctttaaattttttaatttcagttgcagacgtaacataccaaaaccacggacatttttggacaaagtatcaactaccagc |
15165098 |
T |
|
| Q |
122 |
cgcctacagtcaacatgggaaatccatgctttgaaaaacttgaaaggaaccgcattcttggtgcccatggcatcagtagacaacaataaaggatgatggt |
221 |
Q |
| |
|
||||||||||||||||| ||| |||||| |||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15165097 |
cgcctacagtcaacatgagaagtccatgttttgaaaaacttgaaaggaatcgcaatcttagtgcccatggcatcaatagacaacaataaaggatgatggt |
15164998 |
T |
|
| Q |
222 |
ccgagtgatgacgaataagagaattacaattagtgcgcctccaaaaattcaaccaaatatcattacagattgctctgtccaatctgagagcaacagagtc |
321 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |
|
|
| T |
15164997 |
gagagtgatgacggataagagaattacaattagcgcgcctccaaaaattcaaccaaatatcgttgcagattgctctgtccaatctgagagcaatagagtc |
15164898 |
T |
|
| Q |
322 |
cgccctaagtctgccattcgaccaagtgagaaaaggccccatagtaggaagatgagttaataaattagcattagaccactgcaaaaaatccaaacacgac |
421 |
Q |
| |
|
||| | |||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
15164897 |
cgcaccaagtctaccattcaaccaagtaagaaaaggccccatagtaggaagatgaattaataaattagcgttagaccactgcaaaaaatccgaacacgac |
15164798 |
T |
|
| Q |
422 |
agaggagg |
429 |
Q |
| |
|
|||||||| |
|
|
| T |
15164797 |
agaggagg |
15164790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University