View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21621_high_12 (Length: 232)
Name: NF21621_high_12
Description: NF21621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21621_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 28211814 - 28212013
Alignment:
| Q |
19 |
tcaataccttggaatccaagtttcctatagcagaacataatacattgatttgtggatgttaagcagatgactctattcagaaagagttttatacaaatct |
118 |
Q |
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| T |
28211814 |
tcaataccttggaatccaagtttcctatagcagaacataatacattgatttgtggatgttatgcagatgactctattcagaaagagttttatacaaatct |
28211913 |
T |
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| Q |
119 |
aatcttatatatatgatatctattgcagccttgaaccatagactaaacatttaacac--tgccnnnnnnntctataactttgtcctttgctgaacgaaac |
216 |
Q |
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| T |
28211914 |
aatcttatatatatgatatctattgcagccttgaaccatagactaaacatttaacactgtgccaaaaaaatctataactttgtcctttgctgaacgaaac |
28212013 |
T |
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