View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21621_high_7 (Length: 307)
Name: NF21621_high_7
Description: NF21621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21621_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 35154034 - 35153756
Alignment:
| Q |
18 |
accataataatctagagttgaactaaaaagaaacttaaaatttgaataatgattatttaaatgaaagattgaacctaaatttttataattaatttgatct |
117 |
Q |
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| T |
35154034 |
accataataatctagagttcaactaaaaagaaacttaaaatttgaataatgattatttaaatgaaagattgaacctaaatttttataattaatttgatct |
35153935 |
T |
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| Q |
118 |
taaatggggatcccacttgtattccattagagtcatgatacttggtttattgtatgggtgacaataggtttgttgcttatatttctcttgatacttgaca |
217 |
Q |
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| T |
35153934 |
taaatggggatcccacttgtattcctttagagtcgtgatacttgatttattgtatgggtgacaataggcttgttgcttatatttctcttgatacttgaca |
35153835 |
T |
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| Q |
218 |
tattgcatgtattctccataagtcgtgagagttgatttattgcatgggtaacacttgggtcgatgcatgtattattctt |
296 |
Q |
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| T |
35153834 |
tgttgcatgtattctccataagttgtgacagttgatttattgtatgggtaacacttggatcgatgcatgtattattctt |
35153756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 302
Target Start/End: Original strand, 3203856 - 3204011
Alignment:
| Q |
147 |
gagtcatgatacttggtttattgtatgggtgacaataggtttgttgcttatatttctcttgatacttgacatattgcatgtattctccataagtcgtgag |
246 |
Q |
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| T |
3203856 |
gagtcatgacgcttggtttattgcatgggtaacatttgacttgctacatgtatttctcttaacacttgacttgttgcatgtattcatcatgattcatgac |
3203955 |
T |
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| Q |
247 |
agttgatttattgcatgggtaacacttgggtcgatgcatgtattattcttttcact |
302 |
Q |
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| T |
3203956 |
acttggtttattgcatatgtaacacttggctagatgcatgtattcttctttacact |
3204011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 12513108 - 12513235
Alignment:
| Q |
147 |
gagtcatgatacttggtttattgtatgggtgacaataggtttgttgcttatatttctcttgatacttgacatattgcatgtattctccataagtcgtgag |
246 |
Q |
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| T |
12513108 |
gagtcatgacacttggtttattgcatgggtaacactcgacttgttgcatgtattcctcttgacacttgaattgttgcatgtattcttcataagtcatgac |
12513207 |
T |
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| Q |
247 |
agttgatttattgcatgggtaacacttg |
274 |
Q |
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| T |
12513208 |
acttggtttattgcatgtgtaacacttg |
12513235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 10927901 - 10927947
Alignment:
| Q |
249 |
ttgatttattgcatgggtaacacttgggtcgatgcatgtattattctt |
296 |
Q |
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| T |
10927901 |
ttgagttattgcatgggtaacactt-ggtcgatgcatgtattcttctt |
10927947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 18960722 - 18960629
Alignment:
| Q |
197 |
tatttctcttgatacttgacatattgcatgtattctccataagtcgtgagagttgatttattgcatgggtaacacttgggtcgatgcatgtatt |
290 |
Q |
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| T |
18960722 |
tattcctcttgacacttggcttgttgcatgtattcctcatgagtcgtgacatttagtttattgcatgggttacacttggcttgttgcatgtatt |
18960629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 35711624 - 35711554
Alignment:
| Q |
205 |
ttgatacttgacatattgcatgtattctccataagtcgtgagagttgatttattgcatgggtaacacttgg |
275 |
Q |
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| T |
35711624 |
ttgacacttgacatgttgcatgtattcctcacgaatcatgacacttgatttattgcatgggtaacacttgg |
35711554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 18483163 - 18483216
Alignment:
| Q |
220 |
ttgcatgtattctccataagtcgtgagagttgatttattgcatgggtaacactt |
273 |
Q |
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| T |
18483163 |
ttgcatgtattcctcataagtcatgacacttgattttttgcatgggtaacactt |
18483216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 35687402 - 35687314
Alignment:
| Q |
202 |
ctcttgatacttgacatattgcatgtattctccataagtcgtgagagttgatttattgcatgggtaacacttgggtcgatgcatgtatt |
290 |
Q |
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| T |
35687402 |
ctcttggtacttggcttgttgcatgtatttctcatgagtcatgacacttgatttattgcatgggtgacacttggcttgctgcatgtatt |
35687314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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