View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21621_low_1 (Length: 652)
Name: NF21621_low_1
Description: NF21621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21621_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 3 - 437
Target Start/End: Original strand, 43366585 - 43367016
Alignment:
| Q |
3 |
atcatgcttgtaagtaccttcacttgtcttcaaattcgaagaaacaaaaggaagatattagcaacataacaaaaaatgcatnnnnnnngaaggtgagaac |
102 |
Q |
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| T |
43366585 |
atcatgcttgtaagtaccttcacttgtcttcaaattcgaagaaacaaaaggaagatattagcaacataacaaaaaatgaataaaaa---aaggtgagaac |
43366681 |
T |
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| Q |
103 |
attgtttgattaccggaatgtgaaatggggattgctgatgagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaagttacacacag |
202 |
Q |
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| T |
43366682 |
attgtttgattaccggaatgtgaaatggggattgctgatgagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaagttacacacag |
43366781 |
T |
|
| Q |
203 |
cagcagaatggaatgaggaatgtaattgaagtagaaggatgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgatgaaaagaagga |
302 |
Q |
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| T |
43366782 |
cagcaaaatggaatgaggaatgtaattgaagtagaaggatgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgatgaaaagaaaga |
43366881 |
T |
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| Q |
303 |
gaaggcagacggagatggcggaaatgaggaggcggtgaatgagacgacggcggaggaaactggcaagaaggagtccgatgagtcttctggacttgtctgt |
402 |
Q |
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| T |
43366882 |
gaaggcagacggagatggaggaaatgaggaggcgatgaatgagacgacggcggaggaaactggaaagaaggagtccgatgagtcttctggacttgtctgt |
43366981 |
T |
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| Q |
403 |
cttctttctcttcactgatgatggtgtatgcatca |
437 |
Q |
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| T |
43366982 |
cttctttctcttcactgatgatggtttatgcatca |
43367016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 471 - 652
Target Start/End: Original strand, 43367042 - 43367237
Alignment:
| Q |
471 |
gaatgaatattaattacagtttggtgtatgtat--------atatgtgttagctagtgatgatattaatatgtaatgcatggagtaatgtaatgtacgtt |
562 |
Q |
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| T |
43367042 |
gaatgaatattaattacagtttggtgtatgtatgtatgtatatatgtgttagctagtgatgata---atatgtaatgcatggagtaatgtaatgtacgtt |
43367138 |
T |
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| Q |
563 |
attgatta---------ttataattgtgtttgcaattacagttacgacaaatgcatggaattagaggtagaagaagaatgagatgaatatgtgttgtag |
652 |
Q |
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| T |
43367139 |
attgattattattattattataattgtgtttgcaattacagttacgacaaatgcatggaattagaggtagaagaagaatgagatgaatatgtgttgtag |
43367237 |
T |
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