View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21621_low_10 (Length: 252)

Name: NF21621_low_10
Description: NF21621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21621_low_10
NF21621_low_10
[»] chr4 (13 HSPs)
chr4 (17-177)||(13085139-13085299)
chr4 (41-252)||(13086206-13086417)
chr4 (31-142)||(22716574-22716686)
chr4 (31-142)||(22988531-22988643)
chr4 (56-146)||(6659416-6659506)
chr4 (25-146)||(9596854-9596975)
chr4 (25-154)||(54239513-54239640)
chr4 (45-177)||(2053083-2053214)
chr4 (25-117)||(19684789-19684880)
chr4 (45-164)||(22691205-22691325)
chr4 (31-177)||(38223089-38223233)
chr4 (60-177)||(4053030-4053145)
chr4 (28-81)||(2880169-2880221)
[»] chr8 (20 HSPs)
chr8 (25-177)||(18180738-18180890)
chr8 (56-164)||(22921936-22922046)
chr8 (56-164)||(22926734-22926842)
chr8 (56-148)||(42891750-42891842)
chr8 (56-144)||(22512132-22512220)
chr8 (56-139)||(22520885-22520968)
chr8 (56-154)||(6845241-6845339)
chr8 (59-148)||(42890309-42890392)
chr8 (56-164)||(23573477-23573586)
chr8 (25-146)||(4360860-4360982)
chr8 (56-148)||(37189778-37189869)
chr8 (38-154)||(38082155-38082271)
chr8 (25-105)||(12310816-12310895)
chr8 (55-126)||(23570516-23570588)
chr8 (80-177)||(26150572-26150669)
chr8 (26-152)||(9295242-9295366)
chr8 (25-112)||(2262692-2262778)
chr8 (30-154)||(15081477-15081599)
chr8 (56-90)||(22519432-22519466)
chr8 (25-90)||(10456252-10456316)
[»] chr2 (13 HSPs)
chr2 (27-177)||(8781395-8781544)
chr2 (25-177)||(22264317-22264468)
chr2 (56-148)||(27956240-27956332)
chr2 (58-164)||(2155861-2155968)
chr2 (56-148)||(33655538-33655631)
chr2 (56-148)||(27952404-27952496)
chr2 (30-154)||(18725654-18725778)
chr2 (25-117)||(44675277-44675368)
chr2 (58-164)||(2165817-2165924)
chr2 (58-146)||(31634017-31634105)
chr2 (56-146)||(31636250-31636340)
chr2 (56-141)||(22011353-22011439)
chr2 (25-143)||(5841221-5841337)
[»] chr6 (14 HSPs)
chr6 (32-177)||(11190381-11190524)
chr6 (25-165)||(26571044-26571183)
chr6 (56-164)||(3535929-3536037)
chr6 (56-164)||(3542140-3542248)
chr6 (57-164)||(30052096-30052205)
chr6 (57-148)||(30049827-30049918)
chr6 (25-164)||(2339107-2339243)
chr6 (56-143)||(29340892-29340980)
chr6 (25-116)||(13645865-13645955)
chr6 (45-177)||(2939768-2939898)
chr6 (25-154)||(8568646-8568772)
chr6 (25-100)||(19474678-19474752)
chr6 (25-177)||(3565620-3565768)
chr6 (30-154)||(27142537-27142659)
[»] chr1 (13 HSPs)
chr1 (26-177)||(42071378-42071528)
chr1 (56-164)||(50857530-50857640)
chr1 (17-137)||(12486274-12486392)
chr1 (58-164)||(13444076-13444183)
chr1 (56-148)||(8931132-8931223)
chr1 (39-154)||(12033620-12033736)
chr1 (81-154)||(50005237-50005309)
chr1 (56-142)||(13441685-13441772)
chr1 (31-154)||(45085651-45085774)
chr1 (17-146)||(40804573-40804700)
chr1 (27-178)||(42646558-42646702)
chr1 (25-69)||(49044165-49044209)
chr1 (25-154)||(16261517-16261646)
[»] chr7 (14 HSPs)
chr7 (27-148)||(4303361-4303482)
chr7 (56-154)||(13882772-13882870)
chr7 (25-177)||(31577238-31577389)
chr7 (58-154)||(13886276-13886372)
chr7 (32-177)||(5678275-5678418)
chr7 (32-177)||(5703327-5703470)
chr7 (25-100)||(22572444-22572518)
chr7 (56-142)||(859242-859329)
chr7 (56-142)||(1217246-1217333)
chr7 (33-177)||(4668229-4668372)
chr7 (25-112)||(32052989-32053074)
chr7 (208-252)||(38875003-38875047)
chr7 (33-139)||(32936824-32936927)
chr7 (105-148)||(4300468-4300511)
[»] chr3 (19 HSPs)
chr3 (25-177)||(19949885-19950036)
chr3 (56-148)||(5128820-5128912)
chr3 (25-160)||(20398455-20398590)
chr3 (27-133)||(40593501-40593605)
chr3 (25-143)||(4580479-4580596)
chr3 (66-177)||(19795135-19795244)
chr3 (27-177)||(41218686-41218835)
chr3 (56-142)||(3063823-3063910)
chr3 (56-142)||(3068961-3069048)
chr3 (33-144)||(25340146-25340256)
chr3 (60-142)||(53012942-53013025)
chr3 (56-164)||(43304046-43304153)
chr3 (56-164)||(43306758-43306867)
chr3 (31-164)||(25857685-25857822)
chr3 (104-144)||(45168426-45168466)
chr3 (25-154)||(1151109-1151237)
chr3 (92-177)||(39913350-39913436)
chr3 (30-177)||(1697061-1697205)
chr3 (59-177)||(33620096-33620213)
[»] chr5 (7 HSPs)
chr5 (56-148)||(40778872-40778964)
chr5 (25-177)||(19677186-19677337)
chr5 (56-148)||(21849051-21849149)
chr5 (58-177)||(19497363-19497480)
chr5 (33-154)||(7775324-7775442)
chr5 (32-143)||(35160790-35160899)
chr5 (28-150)||(15385013-15385133)
[»] scaffold0251 (1 HSPs)
scaffold0251 (26-154)||(8212-8339)
[»] scaffold0110 (2 HSPs)
scaffold0110 (55-143)||(45347-45435)
scaffold0110 (58-148)||(46792-46882)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 13085139 - 13085299
Alignment:
Q  17 aagagttcgcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13085139 aagagttcgcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccaccaaaattgagagaaa 13085238  T
Q  117 atctcgaataattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13085239 atctcgaataattttattgaataaaaaagtgtctcttaggctgcataatgttctgtttaaa 13085299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 41 - 252
Target Start/End: Original strand, 13086206 - 13086417
Alignment:
Q  41 aaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataa 140  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||| |    
T  13086206 aaagataaattgataggttgtaagcgacaaacctatcaaaataagagttttcagaatccattagaattgagagaaaatctcgaataattttattgaatta 13086305  T
Q  141 aaaagtgtctcttatgctgcataatgttctgtttaaactttacgccttatttgtttaaacttagctttttgcctccgttaacccaatcatcaacaattga 240  Q
    ||||||| | |||| || |||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||    
T  13086306 aaaagtgccccttaggccgcataatgttctgtttaaactttatgccttatttgtttaaacttagttgtttccctctgttaacccaatcatcaacaattga 13086405  T
Q  241 cggtagggacca 252  Q
    ||||||||||||    
T  13086406 cggtagggacca 13086417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 22716686 - 22716574
Alignment:
Q  31 gctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataatt 129  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||| ||||||||| |     
T  22716686 gctaaacctaaaatataaactgacaggttgcaagcgacaaacctatcaaaaaaagggtttccggaatccaccagaattgagagaaaagtctcgaatatta 22716587  T
Q  130 ttattgaataaaa 142  Q
    ||| |||||||||    
T  22716586 ttaatgaataaaa 22716574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 22988531 - 22988643
Alignment:
Q  31 gctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataatt 129  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| || ||||||||||||| ||||||||| |     
T  22988531 gctaaatctaaaagataaactgacaggttgcaagcgacaaacctatcgaaaaaagggtttccggaatccaccagaattgagagaaaagtctcgaatatta 22988630  T
Q  130 ttattgaataaaa 142  Q
    ||| |||||||||    
T  22988631 ttaatgaataaaa 22988643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 6659416 - 6659506
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagt 146  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||| ||||| |||||||    
T  6659416 ggttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaatagttttagtgaatcaaaaagt 6659506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 9596975 - 9596854
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    |||||||||||||||||||||||||  |||||||||||| ||| ||||||||| |||||||||||| |  |||||| || ||||||||||||| |||| |    
T  9596975 gcaagcgctaaacctaaaagataaaaagacaggttgcaaacgataaacctatc-aaataagggtttccataatccaccagaattgagagaaaagtctcaa 9596877  T
Q  124 ataattttattgaataaaaaagt 146  Q
    ||| | ||||||||| |||||||    
T  9596876 atattcttattgaatgaaaaagt 9596854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 54239640 - 54239513
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaa 124  Q
    |||| |||||||||||| || ||||| |||| ||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||  ||||| |    
T  54239640 gcaaacgctaaacctaagaggtaaacagacaagttacaagggacaaacctatcaaa-taagggttttcggaatccaccaaaattgagaaaagttctcg-a 54239543  T
Q  125 taattttattgaataaaaaagtgtctctta 154  Q
    |||||||||||| | ||||| ||| |||||    
T  54239542 taattttattgattgaaaaactgtatctta 54239513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 2053083 - 2053214
Alignment:
Q  45 ataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaa 143  Q
    |||||| |||| ||||||||||||||| |||||||| ||||||||| || ||||||  | |||||||  |||| ||||||||||||||||||||| || |    
T  2053083 ataaacagacaagttgcaagcgacaaatctatcaaa-taagggtttccgaaatccactagaattgaggaaaaagtctcgaataattttattgaatgaata 2053181  T
Q  144 agtgtctcttatgctgcataatgttctgtttaaa 177  Q
    ||| ||||||| ||||||||| ||| ||||||||    
T  2053182 agtctctcttaggctgcataa-gttatgtttaaa 2053214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 19684789 - 19684880
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa 117  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||| | |||| ||  | |||||||||||||    
T  19684789 gcaagcgctaaacctaaaagataaacagacagtttgcaagcgacaaacctatc-aaacaagggtttccagaattcaatagaattgagagaaaa 19684880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 22691325 - 22691205
Alignment:
Q  45 ataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaa 143  Q
    ||||| |||||  |||||||||||||||||||| |||||||||||| ||||||||| || ||||||||||||| ||| ||||| | ||| |||||||||     
T  22691325 ataaattgacacattgcaagcgacaaacctatcgaaataagggtttccggaatccaccagaattgagagaaaagtcttgaatattattaatgaataaaag 22691226  T
Q  144 agtgtctcttatgctgcataa 164  Q
     ||| |||||| ||| |||||    
T  22691225 tgtgcctcttaggctacataa 22691205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 38223089 - 38223233
Alignment:
Q  31 gctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattt 130  Q
    |||||||||||||||||||  || ||| ||||| ||||||||||||| |||||||||||| | |||||||  | |||||||| ||| ||||||  | |||    
T  38223089 gctaaacctaaaagataaatagataggctgcaaacgacaaacctatc-aaataagggtttacagaatccactagaattgaga-aaagtctcgataatttt 38223186  T
Q  131 tattgaat-aaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||| |||||||||||||||| | ||||||| ||| ||||||||    
T  38223187 tattgaatgaaaaaagtgtctcttaggttgcataa-gttatgtttaaa 38223233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 4053145 - 4053030
Alignment:
Q  60 gcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctcttatgct 158  Q
    ||||||||||||||||||||  ||||| |||||| |||||| || ||||||||||||| ||||||||| |||||||||||  ||||| |||||||| | |    
T  4053145 gcaagcgacaaacctatcaag-taaggattttcgaaatccaccataattgagagaaaagtctcgaatatttttattgaat-gaaaagagtctcttaggtt 4053048  T
Q  159 gcataatgttctgtttaaa 177  Q
    |||||| ||| ||||||||    
T  4053047 gcataa-gttttgtttaaa 4053030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 2880221 - 2880169
Alignment:
Q  28 agcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaa 81  Q
    |||||||||||||||||||||||  ||| ||||||||| |||||||| ||||||    
T  2880221 agcgctaaacctaaaagataaacaaacaagttgcaagc-acaaacctgtcaaaa 2880169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 18180738 - 18180890
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaa 124  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||    
T  18180738 gcaagcgctaaacctaaaggataaactgacatgttgcaagcgacaaacctatcaaaataagggtttccagaatccaccagaattgagagaaaatctcgaa 18180837  T
Q  125 taattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||||||||| |||||||| |||||| ||| ||||||||||||||||||    
T  18180838 taattttattgaatcaaaaagtgcctcttaggctacataatgttctgtttaaa 18180890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 22921936 - 22922046
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaa--agtgtctctt 153  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||   |||||||||    
T  22921936 ggttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaggtgtgtctctt 22922035  T
Q  154 atgctgcataa 164  Q
    | |||||||||    
T  22922036 aggctgcataa 22922046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 22926734 - 22926842
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgtctcttat 155  Q
    |||||||||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||||| |||  ||||||||||     
T  22926734 ggttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaatctcgaatatttttattgaattaaattgtgtctcttag 22926833  T
Q  156 gctgcataa 164  Q
    |||||||||    
T  22926834 gctgcataa 22926842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 42891750 - 42891842
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||    
T  42891750 ggttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcaaataattttattgaatcaaaaagtgt 42891842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 22512132 - 22512220
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaa 144  Q
    ||||||||| ||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  22512132 ggttgcaagtgacaaacctatcaaaataagggtttccgaaatccaccagaattgagagaaaatctcgaataattttattgaataaaaaa 22512220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 22520885 - 22520968
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaata 139  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||    
T  22520885 ggttgcaagtgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaata 22520968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 6845339 - 6845241
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaa-ttgagagaaaatctcgaataattttattgaataaaaaagtgtctctta 154  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| | ||| ||||| |||||||||||||||    
T  6845339 ggttgcaagcgacaaacctatcaaaataagggttt-cggaatccaccaaaaattgagagaaaatctcgaatattattaatgaatcaaaaagtgtctctta 6845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 42890392 - 42890309
Alignment:
Q  59 tgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||      ||||||||||||||||||||||||||||| |||||||||    
T  42890392 tgcaagcgacaaacctatcaaaataagggtttccggaatccacca------agagaaaatctcgaataattttattgaatcaaaaagtgt 42890309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 23573586 - 23573477
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctctta 154  Q
    ||||||||||||||||||||||||||||||||||| || |||||| | |||||||||||||| ||||||||| | ||| |||||||||  ||| ||||||    
T  23573586 ggttgcaagcgacaaacctatcaaaataagggtttccgaaatccacctaaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctctta 23573487  T
Q  155 tgctgcataa 164  Q
     ||| |||||    
T  23573486 ggctacataa 23573477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 4360860 - 4360982
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa--tctcg 122  Q
    ||||||| ||||| |||||||||||   ||||||||||||||||||||||||  |||||| |||||   ||||||||| ||||||||| ||||  |||||    
T  4360860 gcaagcgttaaacttaaaagataaatacacaggttgcaagcgacaaacctat-taaataaaggtttctagaatccatcgaaattgagaaaaaaagtctcg 4360958  T
Q  123 aataattttattgaataaaaaagt 146  Q
    |||| ||||||||||| |||||||    
T  4360959 aatatttttattgaatgaaaaagt 4360982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 37189869 - 37189778
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatca-aaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    |||||||||||||||||||||||||||||||| || || |||||| || ||||||||| ||||||||||||| | ||| |||||||||||||||    
T  37189869 ggttgcaagcgacaaacctatcaaaataaggg-ttccgaaatccaccagaaattgaga-aaaatctcgaatattattaatgaataaaaaagtgt 37189778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 38082155 - 38082271
Alignment:
Q  38 ctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaa 137  Q
    ||||||||||||| || |||||||||||||||||| |||| ||||||||||||  |||||| |||| |||||||| ||  ||||||  | ||||||||||    
T  38082155 ctaaaagataaacagagaggttgcaagcgacaaacatatc-aaataagggtttcaggaatctatcagaattgagaaaagttctcgataatttttattgaa 38082253  T
Q  138 t-aaaaaagtgtctctta 154  Q
    | ||||||||| ||||||    
T  38082254 tgaaaaaagtgcctctta 38082271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 12310895 - 12310816
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaa 105  Q
    |||||||||||||||||||||||||| |||| ||||  |||||||||||||| |||| ||||||||||||| |||| ||||    
T  12310895 gcaagcgctaaacctaaaagataaacagacaagttgtgagcgacaaacctat-aaaaaaagggttttcggagtccaccaaa 12310816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 23570588 - 23570516
Alignment:
Q  55 aggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaata 126  Q
    |||||||||||||||||||||||||||||||||||| | |||| || || ||||||||||||| |||||||||    
T  23570588 aggttgcaagcgacaaacctatcaaaataagggtttccagaatgcaccagaattgagagaaaagtctcgaata 23570516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 26150669 - 26150572
Alignment:
Q  80 aataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    ||||||| ||| | ||||||| || ||||||||||||| ||||||||| ||||||||||| |||||||| |||||| ||||||||| ||| ||||||||    
T  26150669 aataaggatttccagaatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaaagtgcctcttaagctgcataa-gttttgtttaaa 26150572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 9295366 - 9295242
Alignment:
Q  26 caagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaat 125  Q
    ||||||||||| |||| |||||||| |||| ||||||||||||||| || || ||||| | ||||  |||||||| || |||||||| ||  ||||| ||    
T  9295366 caagcgctaaatctaagagataaacagacaagttgcaagcgacaaatctgtc-aaatatgagtttctggaatccaccagaattgagaaaagttctcg-at 9295269  T
Q  126 aattttattgaataaaaaagtgtctct 152  Q
    |||||||||||||  |||| |||||||    
T  9295268 aattttattgaatgtaaaactgtctct 9295242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 2262778 - 2262692
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgaga 112  Q
    |||||||  |||| ||||||||||||  ||| |||||||||||||||| | | ||||||||||||||||||||| |  ||||||||||    
T  2262778 gcaagcgtaaaacttaaaagataaacaaacaagttgcaagcgacaaacttgt-aaaataagggttttcggaatctactaaaattgaga 2262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 15081599 - 15081477
Alignment:
Q  30 cgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataatt 129  Q
    |||||||| ||| ||||||||  ||| |||||||||||||||||| || |||||| ||||| | |||||||  | |||||||| ||  ||||| ||||||    
T  15081599 cgctaaacataagagataaacacacaagttgcaagcgacaaacctgtc-aaataaaggtttccagaatccacaagaattgagaaaagttctcg-ataatt 15081502  T
Q  130 ttattgaataaaaaagtgtctctta 154  Q
    ||||||||  ||||| || ||||||    
T  15081501 ttattgaaggaaaaactgcctctta 15081477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 22519432 - 22519466
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttt 90  Q
    ||||||||| |||||||||||||||||||||||||    
T  22519432 ggttgcaagtgacaaacctatcaaaataagggttt 22519466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 10456252 - 10456316
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttt 90  Q
    |||||| ||||| ||||||||||||  || | |||||||||||||||||| |||||| ||||||||    
T  10456252 gcaagctctaaatctaaaagataaatagataagttgcaagcgacaaacctgtcaaaa-aagggttt 10456316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 8781544 - 8781395
Alignment:
Q  27 aagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaata 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||| || ||||||||| ||||||||||||    
T  8781544 aagcgctaaacctaaaagataaacagacaggttgcaagcgacaaacctatc-aaataaggg-tttcgaaatccaccagaattgagagtaaatctcgaata 8781447  T
Q  127 attttattgaat-aaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||||||| ||||||||| |||||| ||||||||| ||||||||||||    
T  8781446 attttattgaatgaaaaaagtgcctcttaggctgcataacgttctgtttaaa 8781395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 22264468 - 22264317
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaa 124  Q
    ||||||| ||||||||| |||||||  ||||||||||||| |||||||||||| || ||| |||||   |||||||||| |||||||| |||||||||||    
T  22264468 gcaagcgttaaacctaatagataaagagacaggttgcaagagacaaacctatcgaa-taaaggtttctagaatccatcagaattgagataaaatctcgaa 22264370  T
Q  125 taattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||||||||| |||||||| |||||| ||||||||||||| || |||||    
T  22264369 taattttattgaatcaaaaagtgcctcttaggctgcataatgttatgcttaaa 22264317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 27956240 - 27956332
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  27956240 ggttgcaagcgacaaacctatgaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgt 27956332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 2155968 - 2155861
Alignment:
Q  58 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctcttatg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| | |||||||||||||  |||||||||| |    
T  2155968 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcagaattgagagaaaagtcttgaatattattattgaataaaagtgtgtctcttagg 2155869  T
Q  157 ctgcataa 164  Q
    ||||||||    
T  2155868 ctgcataa 2155861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 33655631 - 33655538
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatca-aaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    |||||||| |||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||    
T  33655631 ggttgcaaacgacaaacctatcaaaataagggtttccggaatccaccagaaattgagagaaaatctcgaataattttattgaatgaaaaagtgt 33655538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 27952404 - 27952496
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  27952404 ggttgcaagcgacaaacctttgaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgt 27952496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 18725654 - 18725778
Alignment:
Q  30 cgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataat 128  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||| |||||| |||||  ||| ||||  |||||| |||||||| | || ||||||    
T  18725654 cgctaaacttaaaagataaacagacaggctgcaagcgacaaacctatc-aaataaaggtttctggattccactaaaattaagagaaaagtttcaaataat 18725752  T
Q  129 tttattgaataaaaaagtgtctctta 154  Q
    |||||||||| |||||||||||||||    
T  18725753 tttattgaatgaaaaagtgtctctta 18725778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 44675277 - 44675368
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa 117  Q
    |||| ||| |||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||    
T  44675277 gcaaacgccaaacataaaagataaacagacaggttgcaagcgacatacctatc-aaataagggttttcggaatccaccagaattgagagaaaa 44675368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 2165924 - 2165817
Alignment:
Q  58 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctcttatg 156  Q
    |||||||| |||||| |||||||||||  |||||| ||||||| |||||||||||||||| ||||||||| | ||| |||||||||| |||||||||| |    
T  2165924 ttgcaagcaacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttagg 2165825  T
Q  157 ctgcataa 164  Q
    ||||||||    
T  2165824 ctgcataa 2165817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 31634105 - 31634017
Alignment:
Q  58 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatca-aaattgagagaaaatctcgaataattttattgaataaaaaagt 146  Q
    |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||| | ||| |||||||||||||    
T  31634105 ttgcaagcgacaaacctatcaaaataaggg-tttcggaatccaccagaaattgagagaaaatctcaaatattattaatgaataaaaaagt 31634017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 31636340 - 31636250
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatca-aaattgagagaaaatctcgaataattttattgaataaaaaagt 146  Q
    |||||||||||||||||||||||||||||||| || ||||||||| || ||||||||||||||||| ||||| | ||| |||||||||||||    
T  31636340 ggttgcaagcgacaaacctatcaaaataaggg-ttccggaatccaccagaaattgagagaaaatcttgaatattattaatgaataaaaaagt 31636250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 22011439 - 22011353
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaa 141  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||||| | ||| ||||||||    
T  22011439 ggttggaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaa 22011353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 5841337 - 5841221
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaa 124  Q
    |||| |||||||||||||||||||||  ||| |||||||||||||||||| || ||| | ||||||||||||||||  | |||||||| ||  ||||| |    
T  5841337 gcaaacgctaaacctaaaagataaacatacaagttgcaagcgacaaacctgtc-aaacaggggttttcggaatccacaagaattgagaaaagttctcg-a 5841240  T
Q  125 taattttattgaataaaaa 143  Q
    |||||||||||||| ||||    
T  5841239 taattttattgaatgaaaa 5841221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 11190524 - 11190381
Alignment:
Q  32 ctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataatttt 131  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||| ||||| ||| ||||||||| || |||||||||||||||||||||||||||    
T  11190524 ctaaacctaaaatataaagagacaggttgcaagcgacaaacctatcaaa-taagg-tttccggaatccaccagaattgagagaaaatctcgaataatttt 11190427  T
Q  132 attgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    ||||||| ||||||||||| ||| ||| ||||||||||||||||||    
T  11190426 attgaatcaaaaagtgtcttttaagctacataatgttctgtttaaa 11190381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 26571183 - 26571044
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaa 124  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||| |||| ||| || |||||||||||||||   | ||||||||||||||||||||    
T  26571183 gcaagcgctaaacttaaaagataaatagacaggttgcaagcgacaaatctattaaa-taggggttttcggaatccgctagaattgagagaaaatctcgaa 26571085  T
Q  125 taattttattgaataaaaaagtgtctcttatgctgcataat 165  Q
    |||||||||||||| || ||||| |||||| ||||||||||    
T  26571084 taattttattgaatgaataagtggctcttaggctgcataat 26571044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 3536037 - 3535929
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatca-aaattgagagaaaatctcgaataattttattgaataaaaaagtgtctctta 154  Q
    |||||||||||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||| | ||| |||||||||  ||| ||||||    
T  3536037 ggttgcaagcgacaaacctatcaaaataaggg-ttccggaatccaccagaaattgagagaaaatctcgaatattattaatgaataaaagtgtgcctctta 3535939  T
Q  155 tgctgcataa 164  Q
     |||||||||    
T  3535938 ggctgcataa 3535929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 164
Target Start/End: Complemental strand, 3542248 - 3542140
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatca-aaattgagagaaaatctcgaataattttattgaataaaaaagtgtctctta 154  Q
    |||||||||||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||| | ||| |||||||||  ||| ||||||    
T  3542248 ggttgcaagcgacaaacctatcaaaataaggg-ttccggaatccaccagaaattgagagaaaatctcgaatattattaatgaataaaagtgtgcctctta 3542150  T
Q  155 tgctgcataa 164  Q
     |||||||||    
T  3542149 ggctgcataa 3542140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 30052205 - 30052096
Alignment:
Q  57 gttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaa-ttgagagaaaatctcgaataattttattgaataaaaaa--gtgtctctt 153  Q
    |||||||||||||||||||||||||| ||||||  ||||||||| ||||| |||||||||||||||||||| | ||| |||||||||||  |||||||||    
T  30052205 gttgcaagcgacaaacctatcaaaattagggttc-cggaatccaccaaaaattgagagaaaatctcgaatattattaatgaataaaaaagtgtgtctctt 30052107  T
Q  154 atgctgcataa 164  Q
    | |||||||||    
T  30052106 aagctgcataa 30052096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 30049918 - 30049827
Alignment:
Q  57 gttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaa-ttgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    |||||||||||||||||||||||||| ||||||  ||||||||| ||||| |||||||||||||||||||| | ||| |||||||||||||||    
T  30049918 gttgcaagcgacaaacctatcaaaattagggttc-cggaatccaccaaaaattgagagaaaatctcgaatattattaatgaataaaaaagtgt 30049827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 2339107 - 2339243
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    |||||||||||||||||||  ||||| |||||| ||||||| ||||| |||||||| ||||||||| || |||||| || ||||||||||||| |||||     
T  2339107 gcaagcgctaaacctaaaa--taaacagacaggctgcaagc-acaaatctatcaaa-taagggtttccgaaatccaccagaattgagagaaaagtctcg- 2339201  T
Q  124 ataattttattgaataaaaaag-tgtctcttatgctgcataa 164  Q
    ||||||||||||||| |||||| || |||||| |||||||||    
T  2339202 ataattttattgaatgaaaaagatgcctcttaggctgcataa 2339243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 29340892 - 29340980
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaa 143  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||  | ||||||||||||| ||||||||| | ||| ||||||||||    
T  29340892 ggttacaagcgacaaacctatcaaaataaaggtttccggaatccactagaattgagagaaaagtctcgaatattattaatgaataaaaa 29340980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 13645865 - 13645955
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaa 116  Q
    ||||||||| | |||||||||||||| ||||| |||||||| ||||||||||  |||||||||||| ||||||| | || ||||||||||||    
T  13645865 gcaagcgcttagcctaaaagataaacagacagattgcaagcaacaaacctat-taaataagggtttccggaatctaacagaattgagagaaa 13645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 2939768 - 2939898
Alignment:
Q  45 ataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaa-atctcgaataattttattgaataaaaa 143  Q
    |||||| |||| ||||||||||||||||||||| |||||| |||||||| |||||| || ||||||||||||  | | |||| |||||||||||| ||||    
T  2939768 ataaacagacatgttgcaagcgacaaacctatc-aaataa-ggttttcgaaatccaccataattgagagaaattttttgaat-attttattgaatgaaaa 2939864  T
Q  144 agtgt-ctcttatgctgcataatgttctgtttaaa 177  Q
    ||||| |||||| ||||||||| |||||| |||||    
T  2939865 agtgtcctcttaggctgcataa-gttctgcttaaa 2939898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 8568646 - 8568772
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaa 124  Q
    |||| ||||||||||||||||||||| |||| ||||||||| |||||||| |||||| ||  ||||||||||||||  | |||| ||| ||| ||| | |    
T  8568646 gcaaacgctaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaa-aaaagttttcggaatccactagaattaaga-aaagtctag-a 8568742  T
Q  125 taattttattgaataaaaaagtgtctctta 154  Q
    ||||||||||||||  |||| |||||||||    
T  8568743 taattttattgaatggaaaactgtctctta 8568772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 19474678 - 19474752
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatcca 100  Q
    |||||||||||| |||||||||||||  | |||||||||| |||||||||||  ||||||||||||||| ||||||    
T  19474678 gcaagcgctaaagctaaaagataaacatataggttgcaagagacaaacctat-taaataagggttttcgaaatcca 19474752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 3565768 - 3565620
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    |||| |||||||| ||||||||||    |||||||| |||||| ||||||||| ||||||| |||| |  |||||| || ||||||||||||| ||||||    
T  3565768 gcaaacgctaaacttaaaagataaca--acaggttgtaagcgataaacctatc-aaataagagtttccaaaatccaccagaattgagagaaaagtctcga 3565672  T
Q  124 ataattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    ||| |||||||||||  ||||||| |||||  ||| ||||| ||||||||||||    
T  3565671 atatttttattgaat-gaaaagtgcctctttggctacataa-gttctgtttaaa 3565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 27142537 - 27142659
Alignment:
Q  30 cgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataatt 129  Q
    |||||||||||| |||||||  |||| |||||||||||||||||  || || ||||||| |  |||||||| || |||||||| ||  | ||| ||||||    
T  27142537 cgctaaacctaagagataaatagacaagttgcaagcgacaaaccagtc-aattaagggtatctggaatccaccataattgagaaaagttttcg-ataatt 27142634  T
Q  130 ttattgaataaaaaagtgtctctta 154  Q
    ||||||||| ||||| || ||||||    
T  27142635 ttattgaatgaaaaactgcctctta 27142659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 42071378 - 42071528
Alignment:
Q  26 caagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaat 125  Q
    ||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||| |||| ||||  ||||||||||| |||||||||| ||||||||||    
T  42071378 caagcgctaaacctaaaagataaacagacatgttacaagtgacaaacctatcaaa-taagcgtttctggaatccatcataattgagagagaatctcgaat 42071476  T
Q  126 aattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||||||||  |||| ||  ||||| ||||||||||||| ||||||||    
T  42071477 aattttattgaattcaaaaatgcatcttaggctgcataatgttatgtttaaa 42071528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 50857530 - 50857640
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgt--ctctt 153  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| || |||||||||  |||||    
T  50857530 ggttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgtatcaaaaagtgtgcctctt 50857629  T
Q  154 atgctgcataa 164  Q
    | |||||||||    
T  50857630 aggctgcataa 50857640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 12486274 - 12486392
Alignment:
Q  17 aagagttcgcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaa 116  Q
    ||||||| |||||| ||||||||| || | |||| || |  |||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  12486274 aagagttagcaagcactaaacctacaata-aaacagatatattgcaagcaacaaacctattaaa-taagggttttcggaatccaccaaaattgagagaaa 12486371  T
Q  117 atctcgaataattttattgaa 137  Q
    |||||||||||||||||||||    
T  12486372 atctcgaataattttattgaa 12486392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 13444076 - 13444183
Alignment:
Q  58 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctcttatg 156  Q
    ||||||||||||||| ||||||||||||||||| || |||||| || ||||||||||||| |||| |||| | ||| |||||||||| ||| |||||| |    
T  13444076 ttgcaagcgacaaacatatcaaaataagggtttccgtaatccaccagaattgagagaaaagtctctaatattattactgaataaaaatgtgcctcttagg 13444175  T
Q  157 ctgcataa 164  Q
    || |||||    
T  13444176 ctacataa 13444183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 8931223 - 8931132
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatca-aaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    |||||||||||||||||||||||| ||||||| || ||||||||| || ||||||||||||||||||||||| | ||| || ||||||||||||    
T  8931223 ggttgcaagcgacaaacctatcaatataaggg-ttccggaatccaccagaaattgagagaaaatctcgaatattattaatg-ataaaaaagtgt 8931132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 12033620 - 12033736
Alignment:
Q  39 taaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaa 137  Q
    ||||||||||||  ||| |||||||||||||||| |||| |||| ||||||| |  ||||||| | ||||||||||||| ||||||||| ||||||| ||    
T  12033620 taaaagataaacaaacaagttgcaagcgacaaacttatc-aaatgagggtttacataatccattagaattgagagaaaagtctcgaatatttttattaaa 12033718  T
Q  138 taaaaaag-tgtctctta 154  Q
    |||||||| |||||||||    
T  12033719 taaaaaagttgtctctta 12033736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 50005237 - 50005309
Alignment:
Q  81 ataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgtctctta 154  Q
    |||||||||||||||||||||||||||||||| ||  ||||| ||||||||||||||| |||| ||||||||||    
T  50005237 ataagggttttcggaatccatcaaaattgagaaaagttctcg-ataattttattgaatgaaaaggtgtctctta 50005309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 13441685 - 13441772
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaa 142  Q
    |||||||||||| |||||||| ||||||||| ||| |||||||||||| ||||||||||||| |||| |||| | ||| |||||||||    
T  13441685 ggttgcaagcgaaaaacctattaaaataaggatttccggaatccatcagaattgagagaaaagtctctaatattattaatgaataaaa 13441772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 45085774 - 45085651
Alignment:
Q  31 gctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa--tctcgaataat 128  Q
    |||||||||||||||||||| |||| |||||||||||||||  | | | |||||| ||||||| |||||| || |||||||||||||  |||| |||||     
T  45085774 gctaaacctaaaagataaacagacaagttgcaagcgacaaatat-tgacaataagagttttcgaaatccaccagaattgagagaaaagttctc-aataag 45085677  T
Q  129 tttattgaataaaaaagtgtctctta 154  Q
    |||||||||| ||||| || ||||||    
T  45085676 tttattgaatgaaaaactgcctctta 45085651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 40804700 - 40804573
Alignment:
Q  17 aagagttcgcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaa 116  Q
    ||||||| ||||||||||| | |||||||||| |  | || |||||||||||||||||||| ||||| |||||| |  |||||| || ||||||||||||    
T  40804700 aagagttagcaagcgctaa-cataaaagataagcaaaaagattgcaagcgacaaacctatc-aaatacgggtttccaaaatccaccagaattgagagaaa 40804603  T
Q  117 a-tctcgaataattttattgaataaaaaagt 146  Q
    | |||||||| || ||||||||| |||||||    
T  40804602 agtctcgaat-atattattgaatgaaaaagt 40804573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 42646702 - 42646558
Alignment:
Q  27 aagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaata 126  Q
    ||||||||||| ||||||||||||    | | ||||| |||||||||||||||| ||||||||| | ||||||| ||||||||| | ||| |||||   |    
T  42646702 aagcgctaaacataaaagataaac----aagctgcaaacgacaaacctatcaaa-taagggtttccagaatccaccaaaattgaaa-aaagtctcggtaa 42646609  T
Q  127 attttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaac 178  Q
     ||||||||||| ||||| |||||||||  |||||||| ||| |||||||||    
T  42646608 tttttattgaatgaaaaaatgtctcttaaactgcataa-gttttgtttaaac 42646558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 49044209 - 49044165
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgaca 69  Q
    |||||||||||||||||||||||||| || ||| |||||||||||    
T  49044209 gcaagcgctaaacctaaaagataaacagataggctgcaagcgaca 49044165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 16261646 - 16261517
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    |||| ||||||| ||||||||||||   |||||||  || ||| |||| ||||||| |||| ||||| | |||||||| ||||||| | |||| ||||||    
T  16261646 gcaaacgctaaatctaaaagataaataaacaggttataatcgataaacgtatcaaa-taagagtttttgaaatccatcgaaattgataaaaaagtctcga 16261548  T
Q  124 ataattttattgaataaaaaag-tgtctctta 154  Q
     |||| |||||||||||||||| |||||||||    
T  16261547 -taatattattgaataaaaaagttgtctctta 16261517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 4303482 - 4303361
Alignment:
Q  27 aagcgctaaacctaaaagataaactgacaggttgcaagcga-caaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaat 125  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||| ||| |||||||||||||||||||  | |||||||||||||||||||||    
T  4303482 aagcgctaaacctaaaagataaagagacaggttgcaagcgaacaaacctattaaa-taagggttttcggaatccactagaattgagagaaaatctcgaat 4303384  T
Q  126 aattttattgaataaaaaagtgt 148  Q
    ||||||||||||| |||||||||    
T  4303383 aattttattgaatcaaaaagtgt 4303361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 13882772 - 13882870
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgtctctta 154  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  13882772 ggttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcaaataattttattgaatcaaaaagtgtctctta 13882870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 31577238 - 31577389
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| || |||||| || ||||||||||||| ||| ||    
T  31577238 gcaagcgctaaacctaaaagataaacagataggttgcaagcgacaaacctatc-aaataagggtttccgaaatccaccagaattgagagaaaagtcttga 31577336  T
Q  124 ataattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    ||| ||||||||||| |||||||  |||||| | ||||||| ||| ||||||||    
T  31577337 atatttttattgaatgaaaaagttcctcttaggttgcataa-gttttgtttaaa 31577389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 13886276 - 13886372
Alignment:
Q  58 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgtctctta 154  Q
    ||||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  13886276 ttgcaagcgacaaacctatcaaaataagggtttccagaatccaccataattgagagaaaatctcgaatgattttattgaatcaaaaagtgtctctta 13886372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 5678275 - 5678418
Alignment:
Q  32 ctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattt 130  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||  |  | | || || ||||||||||||| |||||||||||||    
T  5678275 ctaaacttaaaagataaacagacaggttacaagcgacaaacctatcaaa-taagggttcacata-tacaccagaattgagagaaaagtctcgaataattt 5678372  T
Q  131 tattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  5678373 tattgaatgaaaaagtgtctcttaagctgcataa-gttctgtttaaa 5678418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 5703327 - 5703470
Alignment:
Q  32 ctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattt 130  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||  |  | | || || ||||||||||||| |||||||||||||    
T  5703327 ctaaacttaaaagataaacagacaggttacaagcgacaaacctatcaaa-taagggttcacata-tacaccagaattgagagaaaagtctcgaataattt 5703424  T
Q  131 tattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  5703425 tattgaatgaaaaagtgtctcttaagctgcataa-gttctgtttaaa 5703470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 22572444 - 22572518
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatcca 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  22572444 gcaagcgctaaacctaaaagataaacagacaggttgcaagcgacaaatctatc-aaataagggtttccggaatcca 22572518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 859242 - 859329
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaa 142  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||| |||| |||| | ||| |||||||||    
T  859242 ggttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaa 859329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 1217246 - 1217333
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaa 142  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||| |||| |||| | ||| |||||||||    
T  1217246 ggttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaa 1217333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 4668229 - 4668372
Alignment:
Q  33 taaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataatttt 131  Q
    |||||||||||||||||| || ||| || |||||||||||||||  |||||||||||| |  |||||| |  |||| |||||||| ||||||||| ||||    
T  4668229 taaacctaaaagataaacagaaaggatgtaagcgacaaacctat-taaataagggtttccataatccacctgaattaagagaaaagtctcgaatattttt 4668327  T
Q  132 attgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
     || ||| |||||||| |||||| ||||||||| ||| ||||||||    
T  4668328 tttcaatgaaaaagtgcctcttaggctgcataa-gttatgtttaaa 4668372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 32053074 - 32052989
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgaga 112  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||| || |||||  |||||||| || |||||| || ||||||||    
T  32053074 gcaagcgctaaacctaaaagataaacagacaatttgcaagcgacaaatctgtcaaa--aagggtttccgaaatccaccagaattgaga 32052989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 38875003 - 38875047
Alignment:
Q  208 tttgcctccgttaacccaatcatcaacaattgacggtagggacca 252  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  38875003 tttgcttccgttaacccaatcaacaacaattgacggtagggacca 38875047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 32936824 - 32936927
Alignment:
Q  33 taaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataatttta 132  Q
    ||||||||| || |||||  ||| ||||||||| |||||  | ||||| ||||||||||||||||||| || |||||||| ||| ||||| |||||||||    
T  32936824 taaacctaagagctaaacaaacaagttgcaagcaacaaatatgtcaaa-taagggttttcggaatccaccataattgaga-aaattctcg-ataatttta 32936920  T
Q  133 ttgaata 139  Q
    |||||||    
T  32936921 ttgaata 32936927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 4300511 - 4300468
Alignment:
Q  105 aattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||    
T  4300511 aattgagagaaaatctcaaataatttgattgaatcaaaaagtgt 4300468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 19950036 - 19949885
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    |||||||||||||||||||||||||| || | |||||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||| |||| |    
T  19950036 gcaagcgctaaacctaaaagataaacagataagttgcaagcgacaaacttatc-aaataagggtttttggaatccatcagaattgagagaaaagtctcta 19949938  T
Q  124 ataattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    ||| ||||||| ||| | |||||| |||||| ||||||||| ||||||||||||    
T  19949937 atatttttattcaatgataaagtgactcttaggctgcataa-gttctgtttaaa 19949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 5128912 - 5128820
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  5128912 ggttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgt 5128820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 20398455 - 20398590
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    |||||||||||||||||||||||| | |||||||||||||||||||  ||||| |||||||||||||||||||||| || |||||||| |||| ||||||    
T  20398455 gcaagcgctaaacctaaaagataatcagacaggttgcaagcgacaagtctatc-aaataagggttttcggaatccaccagaattgagaaaaaagtctcga 20398553  T
Q  124 ataattttattgaataaaaaagtgtctcttatgctgc 160  Q
    ||| |||| || ||||||||| ||||||||| |||||    
T  20398554 atatttttcttaaataaaaaactgtctcttaggctgc 20398590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 40593501 - 40593605
Alignment:
Q  27 aagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaata 126  Q
    |||||||||||| |||| | |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  40593501 aagcgctaaaccaaaaaaa-aaacagacgggttgcaagcgacaaacctatcaaa-taagggttttcggaatccaccaaaattgagagaaaatctcgaata 40593598  T
Q  127 attttat 133  Q
    |||||||    
T  40593599 attttat 40593605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 4580596 - 4580479
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||||  | ||||||||||||| ||||||    
T  4580596 gcaagcgctaaacctaaaagataaacacacaggttgcaagcgacaaacctatc-aaataagggttttcagaatccactagaattgagagaaaattctcga 4580498  T
Q  124 ataattttattgaataaaaa 143  Q
    || |||||||||||| ||||    
T  4580497 at-attttattgaatgaaaa 4580479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 19795244 - 19795135
Alignment:
Q  66 gacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgtctcttatgctgcataat 165  Q
    |||||||||||  ||||||||  || || |||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  19795244 gacaaacctatgcaaataagg--ttacgaaatccaccaaaatttagagaaaatctggaataattttattgaataaaaaattgtctcttaggctgcataat 19795147  T
Q  166 gttctgtttaaa 177  Q
    ||||||||||||    
T  19795146 gttctgtttaaa 19795135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 41218835 - 41218686
Alignment:
Q  27 aagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaat 125  Q
    |||||||||| ||||||||||||  || |||||| |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| ||||||||    
T  41218835 aagcgctaaatctaaaagataaatagataggttgtaagcgacaaacctatc-aaataaggctttccggaatccaccagaattgagagaaaagtctcgaat 41218737  T
Q  126 aattttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    | | |||||||||||||  |||||||||| ||| ||||| |||||| |||||    
T  41218736 attattattgaataaaagtgtgtctcttaggctccataa-gttctgcttaaa 41218686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 3063823 - 3063910
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||| | ||| |||||||||    
T  3063823 ggttgcaagcgacaaacctatcaaaataagggttttcggaatcaaccagaattgagagaaaagtctcgaatattattaatgaataaaa 3063910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 3068961 - 3069048
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaa 142  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||| | ||| |||||||||    
T  3068961 ggttgcaagcgacaaacctatcaaaataagggtttccggaatccaccaaaattgagagaaaagtatcgaatattattaatgaataaaa 3069048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 25340146 - 25340256
Alignment:
Q  33 taaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataatttta 132  Q
    |||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||  ||||||||||| |||||||| ||  | ||||  |||||||    
T  25340146 taaacctaaaagataaacagacaggttgcacgcaacaaacctatc-aaataagggtttctggaatccatcataattgagaaaagttgtcgataaatttta 25340244  T
Q  133 ttgaataaaaaa 144  Q
    ||||||||||||    
T  25340245 ttgaataaaaaa 25340256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 53013025 - 53012942
Alignment:
Q  60 gcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaa 142  Q
    ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||||| | ||| |||||||||    
T  53013025 gcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaa 53012942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 43304046 - 43304153
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctctta 154  Q
    ||||||||||||||||||||| ||||||||||||| || |||||| || ||||||||||||| ||||||||| | ||| |||||  ||||||||||||||    
T  43304046 ggttgcaagcgacaaacctattaaaataagggtttccgaaatccaccagaattgagagaaaagtctcgaatattattaatgaat--aaaagtgtctctta 43304143  T
Q  155 tgctgcataa 164  Q
     ||| |||||    
T  43304144 ggctacataa 43304153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 43306758 - 43306867
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctctta 154  Q
    ||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||| ||| ||||| | ||| |||||||||  ||| ||||||    
T  43306758 ggttgcaagcgacaaacctatcaaaataagggtttccgtaatccaccagaattgagagaaaagtcttgaatattattaatgaataaaagtgtgcctctta 43306857  T
Q  155 tgctgcataa 164  Q
     ||| |||||    
T  43306858 ggctacataa 43306867  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 25857822 - 25857685
Alignment:
Q  31 gctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaa----ataagggttttcggaatccatcaaaattgagagaaaa-tctcgaat 125  Q
    |||||||||||||||||||| ||||  |||||||| ||||| ||||||||    |||||||||| || |||||| || ||||||||||||| |||| |||    
T  25857822 gctaaacctaaaagataaacagaca--ttgcaagcaacaaatctatcaaataaaataagggtttccgaaatccaccacaattgagagaaaagtctcaaat 25857725  T
Q  126 aattttattgaataaaaa-agtgtctcttatgctgcataa 164  Q
    | | ||||||||||||||  |||||||||| ||| |||||    
T  25857724 attattattgaataaaaagtgtgtctcttaggctacataa 25857685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 45168426 - 45168466
Alignment:
Q  104 aaattgagagaaaatctcgaataattttattgaataaaaaa 144  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45168426 aaattgagagaaaatctcgaataattttattgaataaaaaa 45168466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 1151237 - 1151109
Alignment:
Q  25 gcaagcgctaaaccta--aaagataaactgacaggtt-gcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctc 121  Q
    |||||| |||||||||  |||||||||| |||| ||| |||||| |||||||||||||||   |||||||||||||||| || |||||||| ||| ||||    
T  1151237 gcaagcactaaacctataaaagataaacagacaagtttgcaagcaacaaacctatcaaaa---gggttttcggaatccaccagaattgaga-aaagtctc 1151142  T
Q  122 gaataattttattgaataaaaaagtgtctctta 154  Q
     |  | ||||||||||| ||||| ||| |||||    
T  1151141 tataatttttattgaatgaaaaactgtttctta 1151109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 39913350 - 39913436
Alignment:
Q  92 cggaatccatcaaaattgagagaaaa-tctcgaataattttattgaat-aaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    ||||||||| || ||||| ||||||| ||||||||| ||||||||||| ||||| ||| |||||| ||||||||| ||||||||||||    
T  39913350 cggaatccaccagaattgggagaaaagtctcgaatatttttattgaatcaaaaatgtgcctcttaggctgcataa-gttctgtttaaa 39913436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 1697061 - 1697205
Alignment:
Q  30 cgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcgaataat 128  Q
    |||||||| | |||||||||  ||||||||||||||||||||||||||| | || | ||||   |||||||  | ||||  ||||||| ||| || ||||    
T  1697061 cgctaaacatgaaagataaatagacaggttgcaagcgacaaacctatcata-tatgagtttctagaatccactagaattt-gagaaaagtcttga-taat 1697157  T
Q  129 tttattgaataaaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    |||||||||| ||||||| ||||||| | ||||||| ||||||||||||    
T  1697158 tttattgaatgaaaaagtatctcttaagttgcataa-gttctgtttaaa 1697205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 33620096 - 33620213
Alignment:
Q  59 tgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagag-aaaatctcgaataattttattgaataaaaaag-tgtctcttatg 156  Q
    ||||||||  |||||||||||| ||||||||| | ||||||  || ||||||||| ||||||||| ||| ||||||||||| |||||| ||||||||| |    
T  33620096 tgcaagcgcaaaacctatcaaa-taagggtttccagaatcctccagaattgagagaaaaatctcg-atatttttattgaattaaaaagatgtctcttagg 33620193  T
Q  157 ctgcataatgttctgtttaaa 177  Q
    ||| |||| ||| ||||||||    
T  33620194 ctgtataa-gttttgtttaaa 33620213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 40778872 - 40778964
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    |||||||||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  40778872 ggttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgt 40778964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 19677186 - 19677337
Alignment:
Q  25 gcaagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaa-tctcga 123  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||| ||||||    
T  19677186 gcaagcgctaagcctaaaagataaacagataggttgcaagcgacaaacctttc-aaataagggttttcggaatccaccagaattgagagaaaagtctcga 19677284  T
Q  124 ataattttattgaata-aaaaagtgtctcttatgctgcataatgttctgtttaaa 177  Q
    || ||||||||||||| |||  ||| |||||| | ||||||| ||||||||||||    
T  19677285 at-attttattgaatacaaagtgtgcctcttaggatgcataa-gttctgtttaaa 19677337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 21849051 - 21849149
Alignment:
Q  56 ggttgcaagcgacaaacctatcaaaataa------gggttttcggaatccatcaaaattgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    ||||||||||||||||| |||||||||||      | ||||||||||||||  | |||||||||||||||||||||||||||||||||| |||||||||    
T  21849051 ggttgcaagcgacaaacttatcaaaataaaaataagtgttttcggaatccactagaattgagagaaaatctcgaataattttattgaatcaaaaagtgt 21849149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 19497363 - 19497480
Alignment:
Q  58 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaa-ttgagagaaaatctcgaataattttattgaataaaaaagtgtctcttatg 156  Q
    ||||||||||||||| | | |||||| ||  || || |||||||||||| |||||| |||||||| || ||| ||||||||| |||||||| |||||| |    
T  19497363 ttgcaagcgacaaacttgtgaaaataggg--ttccgaaatccatcaaaaattgagaaaaaatctctaa-aatattattgaatcaaaaagtgcctcttagg 19497459  T
Q  157 ctgcataatgttctgtttaaa 177  Q
    |||||||||||||||||||||    
T  19497460 ctgcataatgttctgtttaaa 19497480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 7775442 - 7775324
Alignment:
Q  33 taaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataatttta 132  Q
    |||||||||||||||||| |||| ||||||||| |||||||| |||||| || |||||||||||||||  | |||| ||| ||| ||| | |||||||||    
T  7775442 taaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaa-aaaggttttcggaatccactagaattaaga-aaagtctag-ataatttta 7775346  T
Q  133 ttgaataaaaaagtgtctctta 154  Q
    ||||||  |||| |||||||||    
T  7775345 ttgaatggaaaaatgtctctta 7775324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 35160790 - 35160899
Alignment:
Q  32 ctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataatttt 131  Q
    ||||||||||||||||||| |||| ||||||| |||||||||| || ||||||||||||  ||| |||| || |||| ||| ||  ||||| ||||||||    
T  35160790 ctaaacctaaaagataaacagacaagttgcaaacgacaaacctgtc-aaataagggtttcaggattccaccagaattaagaaaagttctcg-ataatttt 35160887  T
Q  132 attgaataaaaa 143  Q
    ||||||| ||||    
T  35160888 attgaatgaaaa 35160899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 15385013 - 15385133
Alignment:
Q  28 agcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaaatctcgaataa 127  Q
    |||| ||||| |||||||||||| |||| || |||||||||||| || |  ||||||| |||| || ||||||| |||||||||| ||  ||||| ||||    
T  15385013 agcgttaaacttaaaagataaacagacaagtcgcaagcgacaaatctgt-taaataagagtttccgaaatccattaaaattgagaaaagttctcg-ataa 15385110  T
Q  128 ttttattgaataaaaaagtgtct 150  Q
    ||||||||||| ||||| |||||    
T  15385111 ttttattgaatgaaaaaatgtct 15385133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 8212 - 8339
Alignment:
Q  26 caagcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaattgagagaaa-atctcgaa 124  Q
    ||||| ||||||||| ||||||||| |||| |||||||||||||||||| || ||||||||||||  ||||||||||| |||||||| ||| ||||||||    
T  8212 caagctctaaacctagaagataaacagacaagttgcaagcgacaaacctgtc-aaataagggtttctggaatccatcagaattgagaaaaagatctcgaa 8310  T
Q  125 taattttattgaataaaaaagtgtctctta 154  Q
     ||||| ||||||| |||||||||||||||    
T  8311 -aatttgattgaatgaaaaagtgtctctta 8339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 45347 - 45435
Alignment:
Q  55 aggttgcaagcgacaaacctatcaaaataagggttttcggaatccatca-aaattgagagaaaatctcgaataattttattgaataaaaa 143  Q
    ||||||||||||||||||||||||||||||||| || | ||||||| || ||||||||||||||||||||||| | ||| ||||||||||    
T  45347 aggttgcaagcgacaaacctatcaaaataaggg-ttccagaatccaccagaaattgagagaaaatctcgaatattattaatgaataaaaa 45435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 46792 - 46882
Alignment:
Q  58 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcaaaa-ttgagagaaaatctcgaataattttattgaataaaaaagtgt 148  Q
    ||||||||||||||||||||||||| | ||||  ||||||||| ||||| |||||||||||||||||||| | ||| |||||||||||||||    
T  46792 ttgcaagcgacaaacctatcaaaattaaggttc-cggaatccaccaaaaattgagagaaaatctcgaatattattaatgaataaaaaagtgt 46882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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