View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21621_low_4 (Length: 433)
Name: NF21621_low_4
Description: NF21621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21621_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 8e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 232 - 418
Target Start/End: Complemental strand, 42025245 - 42025044
Alignment:
| Q |
232 |
tatttttattcttttgcagttgccatttttacagtttaatgctatattttatcaattcta--------------ttaagtggttgatgaagattaataaa |
317 |
Q |
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| T |
42025245 |
tatttttattcttttgtagttgccatttttacagtttaaagctatattttatcaattctaccttatcaattctattaagtggttgatgaagattaataaa |
42025146 |
T |
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| Q |
318 |
attgaaaagtttcagtacccttgtcgctcataatagcaagccatattaaat-aaatcttaggtgttactatatttcctctattctaaattaagtggtcct |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025145 |
attgaaaagttttagtacccttgtcgctcataatagcaagccgtattaaataaaatcttaggtgttactatatttcctctattctaaattaagtggtcct |
42025046 |
T |
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| Q |
417 |
tt |
418 |
Q |
| |
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|| |
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| T |
42025045 |
tt |
42025044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 42025806 - 42025686
Alignment:
| Q |
17 |
atgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaatgaaagtattcacaatggatcaagttgatacttaggcagaggaatagg |
116 |
Q |
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| T |
42025806 |
atgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaataaaagtattcacaatggatcaagttgatacttaggcagaggaatagg |
42025707 |
T |
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| Q |
117 |
ataaaaaatggggtgaatatg |
137 |
Q |
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| T |
42025706 |
ataaaaaatagggtgaatatg |
42025686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 42025633 - 42025591
Alignment:
| Q |
193 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
235 |
Q |
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| T |
42025633 |
tgtggtgatagtgcaagtatatgtgtgcatatatactagtatt |
42025591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 1253015 - 1252895
Alignment:
| Q |
17 |
atgaaggtgagttaccttatttggtagctcatgtggaactatactctcagaatgaaagtattcacaatggatcaagttgatacttaggcagaggaatagg |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1253015 |
atgaaggtgagttcccttatttggtagctcatgtggaactatattctcagaatgaaagtattcacaatggatcaagttgatacttaggcagaggaatagg |
1252916 |
T |
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| Q |
117 |
ataaaaaatggggtgaatatg |
137 |
Q |
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||||||||||||||||||||| |
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| T |
1252915 |
ataaaaaatggggtgaatatg |
1252895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 1252839 - 1252797
Alignment:
| Q |
193 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252839 |
tgtggtgatagtgcaagtgtatgtgtgcatatatactagtatt |
1252797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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