View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21621_low_9 (Length: 264)
Name: NF21621_low_9
Description: NF21621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21621_low_9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 42026037 - 42025789
Alignment:
| Q |
14 |
atcaacatacatagtaagtgtcacatcttcactttggctagagatgccacataaagatcttgtgcatttccaaccacatttgatgtttcttcaggacctt |
113 |
Q |
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| T |
42026037 |
atcaacatacatagtaagtgtcacatcttcactctggctaga--tgccacataaagaccttgtgcatttccaactacatttgatgtttcttcaggacctt |
42025940 |
T |
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| Q |
114 |
ccctaagaggatcgtcaatggcataaacagtaccaaacaatgaatgtttcttaggaatgtcacttatttggttagcacgtgccacaacaactgcacttgg |
213 |
Q |
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| T |
42025939 |
ccctaagaggattgtcaatggcataaacagtaccaaacaatgaatgtttcttaggaatgtcacttgtttggttagcacgtgccacaacaactgcacttgg |
42025840 |
T |
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| Q |
214 |
gttattgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttacctt |
264 |
Q |
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| T |
42025839 |
gttattgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttacctt |
42025789 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 1253045 - 1252998
Alignment:
| Q |
217 |
attgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttacctt |
264 |
Q |
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| T |
1253045 |
attgcctgtgtgaatatcaaagtagtagaaatgaaggtgagttccctt |
1252998 |
T |
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