View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21622_high_11 (Length: 476)
Name: NF21622_high_11
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 461
Target Start/End: Original strand, 12894605 - 12895048
Alignment:
| Q |
17 |
aacatcaaatataataaccatgagaacttgatttagtaggaaaaaagacagatcttatatcannnnnnnnnn---gagcaaaatcttatatcatatttta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12894605 |
aacatcaaatataataaccatgagaacttgatttagtaggaaaaaagacagatcttatatcatttttttttttttgagcaaaatcttatatcatatttta |
12894704 |
T |
|
| Q |
114 |
ggtttgagatattccaataccttattccagaccccatccctcaccatgtttttgtaatatatacacatannnnnnnnnnnnnnaaattttgtgtcacgnn |
213 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12894705 |
ggtttgagaaattccaataccttatttcagaccccatccctgaccatgtttttgtaatatatacacatatgtgtgtgtgtg--aaattttgtgtcacgtt |
12894802 |
T |
|
| Q |
214 |
nnnnnnacggaaattgnnnnnnngcatcgcgttaaacttacttttgttgaatattttaactatacatttgattattgnnnnnnnngaaaactatacactt |
313 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12894803 |
atttt-acggaaattgtttttt-gcatcgcgttaaacttacttttgttgaatattttaactatacatttgattattgaaaaaaaagaaaactatacactt |
12894900 |
T |
|
| Q |
314 |
gattagacaagaattgatcctcaattaaagaagtgaaccacaaagtttatgccaccccatgtaccacttaaatattaaatcctcaactgaaaacaactaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
12894901 |
gattagacaagaattgatcctcaattaaagaagtggaccacaaagtttatgccacccgatgtaccacttaaatattaaatcctcaactcaaagcaactaa |
12895000 |
T |
|
| Q |
414 |
agcaattaatccacgtcgagattgattgatttattatactccttccgt |
461 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12895001 |
agcaattcatccacgtcgagattgattgatttattatactccctccgt |
12895048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University