View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21622_high_2 (Length: 687)
Name: NF21622_high_2
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 94 - 613
Target Start/End: Complemental strand, 22074211 - 22073691
Alignment:
| Q |
94 |
tcctttccttctattactcttttcaataagatagcagagtacaattgagaccatgcatgggaaaatgtcaaactatatctttttcacttccaaaagcgtg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
22074211 |
tcctttccttctattactcttttcaataagatagcagagtacaattgagaccatgcatggaaaaatgtcaaactatatcttttccccttccaaaagcgtg |
22074112 |
T |
|
| Q |
194 |
gttaacttcatttatagaacaacatnnnnnnnnctctctcatcacttttattaactaaatacaagttctaaaactaacatatgtcatggatcctcttcaa |
293 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22074111 |
gttaacttcatttatagaaaaacataaaaaaaactctctcatcacttttattaactaaatacaagttctaaaactaacctatgtcatggatcctcttcaa |
22074012 |
T |
|
| Q |
294 |
cttaggcaacaagaacaacagtcaacttcaa-agagagaaggaaattagtgttagaaggcaagaaagtatgtgtgtctactgatattaacacacgaactt |
392 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || || |
|
|
| T |
22074011 |
cttaggcaaaaagaacaacagtcaacttcaagaaagagaaggaaattagtgttagaaggcaagaaagtatgtgtgtctactaacattaacacaccaattt |
22073912 |
T |
|
| Q |
393 |
ctaaagtcaaaccaaaactcaaagtcattaaacctattaatttgaatgaaacagtgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaag |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22073911 |
ctaaagtcaaaccaaaactcaaagtcattaaacctattaattttaatgaaacagtgcttcaacatgaaaatgcagcagcaggaagagaaaacaggaaaag |
22073812 |
T |
|
| Q |
493 |
aattctctaccaaagtaaggcacttgctgcatccaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttgatggaagcagaatccaa |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22073811 |
aattctctaccaaagtaaggcacttgctgcatcaaaaaaagtttgtgttcattctcctcaactgcccaatccaaaacaatttaatggaagcagaatccaa |
22073712 |
T |
|
| Q |
593 |
ccagaggtcgcggttctaagc |
613 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
22073711 |
ccagaggtcgcagttctaagc |
22073691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 22076433 - 22076346
Alignment:
| Q |
12 |
catcatcatcaatttacctgcttcaacagtaatgtcaaatcccactttctcctacattagccactctaccaaaagctaactgtccttt |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
22076433 |
catcatcatcaatttacctgcttgaacagtaatgtcaaattccactttctcctacattagcccctctaccaaaaattaacggtccttt |
22076346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 609 - 674
Target Start/End: Original strand, 22073601 - 22073666
Alignment:
| Q |
609 |
taagcgtctggatatagatgaagattcggcatgacctgttaatggcacatgtaacttgttattttg |
674 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22073601 |
taagcgtctggatatagatgaagattcagcatgacctgttaatggcacatctaacttgttattttg |
22073666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University