View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21622_high_6 (Length: 588)
Name: NF21622_high_6
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_high_6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 13 - 569
Target Start/End: Original strand, 17882245 - 17882801
Alignment:
| Q |
13 |
aaaatatgaggaaagcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagcatcccatcctattgtataacaatgaagtc |
112 |
Q |
| |
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||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17882245 |
aaaatatgaggaaagcagtctacctgtctggagcagtagaaaacaattctttaagttcacagggttggagcatcccatcctattgtataacaatgaagtc |
17882344 |
T |
|
| Q |
113 |
agttgagaaaatgtccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17882345 |
agttgagaaaatgtccaaaaatgattggggagcagcatgaaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttca |
17882444 |
T |
|
| Q |
213 |
tcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17882445 |
tcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgtt |
17882544 |
T |
|
| Q |
313 |
gtcaactaattgaatacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17882545 |
gtcaactaattgaatacaaacaggtataacatactaagaacataaatcatgaggtcacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaa |
17882644 |
T |
|
| Q |
413 |
aggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaagg |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17882645 |
aggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaagg |
17882744 |
T |
|
| Q |
513 |
acatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcagac |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
17882745 |
acatgaagaaatagaaaccctgtcaaagtaattcctcgttcattcacaccttcagac |
17882801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 127 - 567
Target Start/End: Original strand, 14774988 - 14775426
Alignment:
| Q |
127 |
ccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtcattagcacagatgacatacaaaatcactgtcaagttcatcaaaaactgtctt |
226 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||||| ||||||||||| ||||| || || |||||||||| |||||| ||||||| | | ||| |
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|
| T |
14774988 |
ccaaaaatgattgggaagcagcatgaaaatgtgaaattagtcagggtcatttgcacaaataactcacaaaatcaccatcaagtccatcaaagattttctc |
14775087 |
T |
|
| Q |
227 |
caagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagttccatgttgtcaactaattgaa |
326 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||| ||||| | | | ||||| ||| ||| |
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|
| T |
14775088 |
caagaaacaaattgcttcatttgttaactcaacactctgcagacattaaatccgatgagaatagaataagat--aagtttcttatactcaacaaat-gaa |
14775184 |
T |
|
| Q |
327 |
tacaaacaggtataacatactaagaacataaatca-tgaggccacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaaggtggaattaaa |
425 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| | | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14775185 |
tacaaacatgtataacatataaagaacataaaaaaataaggtcacaattcatctgaaaagaaacacctgatcaggtgcacgtttcaaaggtggaatcaaa |
14775284 |
T |
|
| Q |
426 |
tcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaaaggacatgaagaaata |
525 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| | ||| |||||||| ||| ||| | |||||| ||| |
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|
| T |
14775285 |
ttatcagcaagcttgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacggggcattttttctaagaagagggcgtgaagagata |
14775384 |
T |
|
| Q |
526 |
gaaaccctgtcaaagtaagtcctcgttcattcacaccttcag |
567 |
Q |
| |
|
||| |||| ||||| |||||| || |||||||||||||||| |
|
|
| T |
14775385 |
taaatcctgccaaagaaagtccccgctcattcacaccttcag |
14775426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 189 - 569
Target Start/End: Original strand, 15049893 - 15050264
Alignment:
| Q |
189 |
catacaaaatcactgtcaagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaat |
288 |
Q |
| |
|
||||||||||||| |||| ||||||||| | ||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| | || | |
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|
| T |
15049893 |
catacaaaatcaccatcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagt |
15049992 |
T |
|
| Q |
289 |
agaataagatgcaagttccatgttgtcaactaattgaatacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctcaaaagaaa |
388 |
Q |
| |
|
|| ||||| |||||||||||| || ||||||||||||||| |||||||||| ||||| |||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
15049993 |
agcataag-------ttccatgttgtcgacaaattgaatacaaacatgtataacatataaagaatataatacatgatgccacaatttatctcaaaagaaa |
15050085 |
T |
|
| Q |
389 |
cacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctca |
488 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||| || |||||||||| |||| |
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|
| T |
15050086 |
gacctgatcaggtgc--gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaacttcctgagtacggtccatgttgcctca |
15050183 |
T |
|
| Q |
489 |
agaggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcagac |
569 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||| ||||||| | |||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
15050184 |
ggaggccccttttccatgaaaagggtatgaagatatagaaatcatgtcaaggtaagttctcgttcattcacaccttcagac |
15050264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 204 - 565
Target Start/End: Original strand, 15017135 - 15017491
Alignment:
| Q |
204 |
tcaagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaag |
303 |
Q |
| |
|
|||| ||||||||| | ||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| |||| | |||||||||||| | || |
|
|
| T |
15017135 |
tcaaattcatcaaagattgtctccaagaaatcaactgcttcatttgtcaattcaacactctgcatacattaaa-ccaatgagaatagaataagttccat- |
15017232 |
T |
|
| Q |
304 |
ttccatgttgtcaactaattgaa-tacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctcaaaagaaacacctgatcaggtg |
402 |
Q |
| |
|
|| |||||||| ||||||| ||||||||||||||||||| ||||||||| || || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15017233 |
----atattgtcaacaaattgaaatacaaacaggtataacatatagagaacataatacaagatgccacaatttatctcaaaagaaacacctgatcaggtg |
15017328 |
T |
|
| Q |
403 |
cacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttc |
502 |
Q |
| |
|
|| | |||||||| |||| ||||||| |||||||||||| ||||| ||||||||||||| | | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
15017329 |
caagcttcaaaggcggaaataaatcagcagcaagcttgacatcataattatatccaaacttttttagcacagtccatgttgcctcaagaggccctttttc |
15017428 |
T |
|
| Q |
503 |
tatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttc |
565 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
15017429 |
tatgaaaagggcatgaagaaatagaaatcctgttgaagtaagtcctcgttcattcacgccttc |
15017491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 15049735 - 15049793
Alignment:
| Q |
26 |
agcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagca |
84 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
15049735 |
agcaatctacctttccggagcagtagaaaacagttcttcaagttcacggggttgcagca |
15049793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 108 - 569
Target Start/End: Complemental strand, 36874788 - 36874313
Alignment:
| Q |
108 |
aagtcagttgagaaaatgtccaaaaatgattggggagcagcatggaaaagtgaaattattcagggtca--ttagcacagatgacatacaaaatcactgtc |
205 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||| | |||||| |||||||||||||||| | ||| | | ||||||| |||||| || |
|
|
| T |
36874788 |
aagtcagtagtgaaaatgtctgaaaatgattggggagcagcaag-aaaagtaaaattattcagggtcacatgtgcaaa-aggacataccaaatcagcatc |
36874691 |
T |
|
| Q |
206 |
aagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaagtt |
305 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||| | |||||||||||||| | | | |
|
|
| T |
36874690 |
aaatgattcaaaagttgtcttcaagaaatcaattgcttcatgtgtcaattcaacactctgcaaacgttaaatccaaagagaatagaataagatataggat |
36874591 |
T |
|
| Q |
306 |
ccatgttgtcaactaattgaatacaaacaggtataacatactaagaacataaatcatgaggccacaattcatctcaaaagaaa--------------cac |
391 |
Q |
| |
|
| | |||||||| ||||||| |||||||||||||||||| |||| ||||| ||| || ||| ||||| || ||| ||| ||| |
|
|
| T |
36874590 |
ctaagttgtcaagaaattgaacacaaacaggtataacatataaagagcataattcacaagaccaagattcaactagaaaaaaagagaataaaaaaagcac |
36874491 |
T |
|
| Q |
392 |
ctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaaga |
491 |
Q |
| |
|
||||||||| | || ||||||||||||| | |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||| ||||||||| |
|
|
| T |
36874490 |
ctgatcaggagtgcgcttcaaaggtggaactgcatcatcagcaagcttgatttcatcattatatccgaactttctgagcacagtccatgtagtctcaaga |
36874391 |
T |
|
| Q |
492 |
ggccctttttctatgaaaaggacatgaagaaatagaaaccctgtcaaagtaagtcctcgttcattcacaccttcagac |
569 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| || |||||||||||| |
|
|
| T |
36874390 |
cgccctttttctatgaaaagggcatgaagaaatagaaatcccgtcaaagtaagtcctcgttcgttaacaccttcagac |
36874313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 36874912 - 36874833
Alignment:
| Q |
15 |
aatatgaggaaagcagtctacatgtccggagcagtagaaaacaattcttcaagttcacagggttggagcatcccatccta |
94 |
Q |
| |
|
||||| |||| |||| ||||| | ||||| ||||| |||||||||||||||||||||| ||| | | |||||||||||| |
|
|
| T |
36874912 |
aatattaggatagcaatctacctttccggggcagtggaaaacaattcttcaagttcacggggacgcaacatcccatccta |
36874833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 480
Target Start/End: Complemental strand, 53866755 - 53866639
Alignment:
| Q |
364 |
aggccacaattcatctcaaaagaaacacctgatcaggtgcacgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacct |
463 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53866755 |
aggccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaacct |
53866656 |
T |
|
| Q |
464 |
cctgagcacagtccatg |
480 |
Q |
| |
|
| |||| |||||||| |
|
|
| T |
53866655 |
tttaagcatagtccatg |
53866639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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