View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_high_9 (Length: 498)
Name: NF21622_high_9
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Original strand, 28152370 - 28152850
Alignment:
| Q |
12 |
atgaaggatttaaattttgtggtgtcatttttgctgaatctaattgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagct |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28152370 |
atgaaggatttaaattttgtggtgtcatttttgcggaatctaactgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagct |
28152469 |
T |
|
| Q |
112 |
ctactttgaggt-------------tcttcataattgtatttttgtactattattcgaatgataaataaggatattatattcattaattactgattaatt |
198 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28152470 |
ctactttgaggtacttaagtatggttcttcataattgtatttttgtactattattcgaatgataaataaggatattatattcatta----ctgattaatt |
28152565 |
T |
|
| Q |
199 |
ctccaaattttaatacatctgtaaaatgttgtatcatgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacaga |
298 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28152566 |
ctccaaattataatacatctgtaaaatgttgtatcatgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacaga |
28152665 |
T |
|
| Q |
299 |
acaacaatggaagtcgcatcaagatcaaagcattgaaaaggtaaacaactaactattcatataggatttcttacttagaaccaagtttaattttaattaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
28152666 |
acaacaatggaagtcgcatcaagatcaaagcattgaaaaggtaaacaactaactattc--ataggatttctcacttagaaccaagtttaattttaattaa |
28152763 |
T |
|
| Q |
399 |
catggcatgcaggaacgaaagagaaaggtattagtccaagcactagacgaacaaggacaccctttaccaaatgcaagtatatatatt |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
28152764 |
catggcatgcaggaacgaaagagaaaggtattagtccaagcactagacgaacaaggacaccctttaccaaatgcgagcatatatatt |
28152850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 8024292 - 8024177
Alignment:
| Q |
15 |
aaggatttaaattttgtggtgtcatttttgctgaatctaattgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagctcta |
114 |
Q |
| |
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|||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||| |||| | |||||||||||| |
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| T |
8024292 |
aaggatttaaatttggtggtgctatttttgctgagcctaattgttggtccatgcttaagggtggtcttatagcagatacaacaggagtagctgagctcta |
8024193 |
T |
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| Q |
115 |
ctttgaggttcttcat |
130 |
Q |
| |
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|||||||| |||||| |
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| T |
8024192 |
ttttgaggtacttcat |
8024177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 8024100 - 8023990
Alignment:
| Q |
235 |
tgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacagaacaacaatggaagtcgcatcaagatcaaagcattga |
334 |
Q |
| |
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||||||| |||||||||| ||| ||||||||| | |||| |||||||| ||||||||||||||| | ||||||| || |||||||| | ||| ||||| |
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| T |
8024100 |
tgtagagcaataatacttctgtcgaaatttgggtcgacaacgtatccttgcaaccattcacagaaaagcaatggagatctcatcaagaactaagtattga |
8024001 |
T |
|
| Q |
335 |
aaaggtaaaca |
345 |
Q |
| |
|
|||||| |||| |
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|
| T |
8024000 |
aaaggtgaaca |
8023990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 480
Target Start/End: Complemental strand, 8023871 - 8023836
Alignment:
| Q |
445 |
acgaacaaggacaccctttaccaaatgcaagtatat |
480 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8023871 |
acgaacaaggacaccctttaccaaatgcaagtatat |
8023836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 21544706 - 21544596
Alignment:
| Q |
13 |
tgaaggatttaaattttgtggtgtcatttttgctgaatctaattgttggtctatgcttaagggtggtttcatagcagatacatcaggggaagctgagctc |
112 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||| | ||||||||||||||||||||||||||| ||| ||| || || ||| | |||||||||| |
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| T |
21544706 |
tgaaggatttaaatttggtggtgccatttatgctgagccgaattgttggtctatgcttaagggtggtctcacagcggacgcaacagaagtagctgagctc |
21544607 |
T |
|
| Q |
113 |
tactttgaggt |
123 |
Q |
| |
|
|| |||||||| |
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|
| T |
21544606 |
tattttgaggt |
21544596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 21544476 - 21544366
Alignment:
| Q |
235 |
tgtagagtaataatacttatgtggaaatttggatagacagtgtatccttacaaccattcacagaacaacaatggaagtcgcatcaagatcaaagcattga |
334 |
Q |
| |
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||||||| |||||||||| ||| ||||||||||| |||| | ||||| ||||| |||||| || ||||||||| ||| |||||||| |||| ||||| |
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| T |
21544476 |
tgtagagcaataatacttctgttgaaatttggatcgacaacatttccttgcaacctttcacaaaaaaacaatggacgtctcatcaagaacaaaatattga |
21544377 |
T |
|
| Q |
335 |
aaaggtaaaca |
345 |
Q |
| |
|
||||||||||| |
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|
| T |
21544376 |
aaaggtaaaca |
21544366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 485
Target Start/End: Complemental strand, 21544182 - 21544127
Alignment:
| Q |
430 |
tagtccaagcactagacgaacaaggacaccctttaccaaatgcaagtatatatatt |
485 |
Q |
| |
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|||| |||||||| || |||||||||| |||||||||||||||||| |||| |||| |
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| T |
21544182 |
tagtacaagcacttgatgaacaaggacgccctttaccaaatgcaagaatatctatt |
21544127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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