View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_low_10 (Length: 494)
Name: NF21622_low_10
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 6816874 - 6816374
Alignment:
| Q |
1 |
ggtattatttgtattgttgctcaaccacaaaataacatggagtataatattca---------tgatgttcatgtttatcagcttgttaagaactcaatgc |
91 |
Q |
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| T |
6816874 |
ggtattatttgtattgttgctcaaccacaaaataacatggagtataatattcaagatattcatgatgttcatgtttttcagcttgttaagaactcaatgc |
6816775 |
T |
|
| Q |
92 |
caccaaatttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgcaccacttgtaaaagaaggtagtaaatggct |
191 |
Q |
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| T |
6816774 |
caccaaatttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgcaccacttgtaaaagaaggtagtaaatggct |
6816675 |
T |
|
| Q |
192 |
caccaaaaccgcagaatcatgctcggtggtagcagca---------gctgttgcattctcaacctcaacagctatcccaggtggtcctaatcaaaataat |
282 |
Q |
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| T |
6816674 |
caccaaaaccgcagaatcatgctcggtggtagcagcacttgctgcagctgttgcattcacaacctcaacatctatcccaggtggtcctaatcaaaataat |
6816575 |
T |
|
| Q |
283 |
ggtataccactatttataaaagaacctgctttcaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagcccttgtttcgnnnnnnn |
382 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6816574 |
ggtataccactatttatgaaagaacctgcttacaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagctcttgtttcgtttcttt |
6816475 |
T |
|
| Q |
383 |
cgatactcacatctcggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatctgt |
482 |
Q |
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| T |
6816474 |
cgatactcacatctaggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatctgt |
6816375 |
T |
|
| Q |
483 |
g |
483 |
Q |
| |
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| |
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| T |
6816374 |
g |
6816374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 63 - 483
Target Start/End: Complemental strand, 6831231 - 6830802
Alignment:
| Q |
63 |
tgtttatcagcttgttaagaactcaatgccaccaaatttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgca |
162 |
Q |
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||||| |||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6831231 |
tgtttttcagcttgttaagaactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcaagtcttcattgatacacacgca |
6831132 |
T |
|
| Q |
163 |
ccacttgtaaaagaaggtagtaaatggctcaccaaaaccgcagaatcatgctcggtggtagca---------gcagctgttgcattctcaacctcaacag |
253 |
Q |
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| T |
6831131 |
ccacttacaaaagaaggtagtaaatggctcaccaaaaccgcagaatcttgctcagtggtagcagcacttgttgcaactgttgcattcacaacctcgacag |
6831032 |
T |
|
| Q |
254 |
ctatcccaggtggtcctaatcaaaataatggtataccactatttataaaagaacctgctttcaaactctatgctgcagcatcacttgttgcactttgctt |
353 |
Q |
| |
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| T |
6831031 |
ctatcccaggtggtcctgatcaagaatccggtatgccactactgctagaaaagcctgctttcaaactctatgctgtagcatcacttgttgcactttgctc |
6830932 |
T |
|
| Q |
354 |
ctctgtcacagcccttgtttcgnnnnnnncgatactcacatctcggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttg |
453 |
Q |
| |
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| T |
6830931 |
ctctgtcacagcccttgttttgtttctttccatactcacatctcggtttgaagaaaaagattttgttattgacttaccaagaaagcttcttgtagggttg |
6830832 |
T |
|
| Q |
454 |
actacactcttcacatctatagcatctgtg |
483 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6830831 |
actacactcttcacatctatagcatctgtg |
6830802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 51 - 482
Target Start/End: Complemental strand, 6808851 - 6808414
Alignment:
| Q |
51 |
tcatgatgttcatgtttatcagcttgttaagaactcaatgccaccaaatttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcatt |
150 |
Q |
| |
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|||||||||| | ||| ||||||||||||| |||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
6808851 |
tcatgatgtttgtatttttcagcttgttaaggactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcaggtcttcatt |
6808752 |
T |
|
| Q |
151 |
gagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaaccgcagaatcatgctcggtggtagcagca------gc---tgttgcattct |
241 |
Q |
| |
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|| ||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| |
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| T |
6808751 |
gacacacacggacaacttgtaaaagaaggtggtaaatggctcaccaaaactgcagaatcatgctcagtggtagcagcacttgttgcaagtgttgcattca |
6808652 |
T |
|
| Q |
242 |
caacctcaacagctatcccaggtggtcctaatcaaaataatggtataccactatttataaaagaacctgctttcaaactctatgctgcagcatcacttgt |
341 |
Q |
| |
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||||||||||| ||||||||||||| | || | || ||||||||||| |||| ||||| | |||| ||||||||| ||||||| |||||||||||| |
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| T |
6808651 |
caacctcaacatctatcccaggtgg---ttatgatgatgatggtataccaatattcctaaaaaagcctgttttcaaactatatgctgtagcatcacttgt |
6808555 |
T |
|
| Q |
342 |
tgcactttgcttctctgtcacagcccttgtttcgnnnnnnncgatactcacatctcggtttgaagaaaaagattttgttgtggacttaccaagaaggctt |
441 |
Q |
| |
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||||||||||| |||||||| || |||||| | ||||||| || ||||||||| ||||||| |||||| ||||||||||||||| || |||| |
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| T |
6808554 |
tgcactttgctcctctgtcatggctcttgttatgtttctttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaaaaaagctt |
6808455 |
T |
|
| Q |
442 |
cttgtagggttgactacactcttcacatctatagcatctgt |
482 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
6808454 |
cttctagggttgactacactcttcacatctatagcatctgt |
6808414 |
T |
|
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