View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_low_12 (Length: 420)
Name: NF21622_low_12
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 50 - 251
Target Start/End: Original strand, 22073309 - 22073511
Alignment:
| Q |
50 |
atcccactcttagaatgtcgaggcattttactatgaatttgat-gttgggttgagtccatttttcctgtgacatcgttcttttaacatgactctggttag |
148 |
Q |
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| T |
22073309 |
atcccactcttagaatgccgaggcattttactatgaatttgatcgttgggttgagtccatttttcctgtgacacagttcttttaacatgagtctggttag |
22073408 |
T |
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| Q |
149 |
ggtagaacaaattttgacgatttgaaatatctgctaaaggagtggtgtatgcattggnnnnnnnnnatgtagtgggagtattatggatgtaatcagatgg |
248 |
Q |
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| T |
22073409 |
ggtagaacaaattttgacgatttgaaatatctgctaaaggagtggtgtatgcattggttttttttgatgtagtgggagtattatggatggaatcagatgg |
22073508 |
T |
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| Q |
249 |
tga |
251 |
Q |
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||| |
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| T |
22073509 |
tga |
22073511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 22073576 - 22073666
Alignment:
| Q |
317 |
gtgggtgtacaacattggttcggtttaagcgtctggatatagatgaagattcggcatgacctgttaatggcacatgtaacttgttattttg |
407 |
Q |
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| T |
22073576 |
gtgggtgtacaacattggttcggtttaagcgtctggatatagatgaagattcagcatgacctgttaatggcacatctaacttgttattttg |
22073666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 22076433 - 22076388
Alignment:
| Q |
12 |
catcatcatcaatttacctgcttcaacagtaatgtcaaatcccact |
57 |
Q |
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| T |
22076433 |
catcatcatcaatttacctgcttgaacagtaatgtcaaattccact |
22076388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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