View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_low_14 (Length: 406)
Name: NF21622_low_14
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 22073288 - 22073511
Alignment:
| Q |
15 |
acaaatttgctgagaaggttgatcccactcttagaatgtcgaggcattttactatgaatttgat-gttgggttgagtccatttttcctgtgacatcgttc |
113 |
Q |
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| T |
22073288 |
acaaatttgctgagaaggttgatcccactcttagaatgccgaggcattttactatgaatttgatcgttgggttgagtccatttttcctgtgacacagttc |
22073387 |
T |
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| Q |
114 |
ttttaacatgactctggttagggtagaacaaattttgacgatttgaaatatctgctaaaggagtggtgtatgcattggnnnnnnnnnatgtagtgggagt |
213 |
Q |
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| T |
22073388 |
ttttaacatgagtctggttagggtagaacaaattttgacgatttgaaatatctgctaaaggagtggtgtatgcattggttttttttgatgtagtgggagt |
22073487 |
T |
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| Q |
214 |
attatggatgtaatcagatggtga |
237 |
Q |
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| T |
22073488 |
attatggatggaatcagatggtga |
22073511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 303 - 393
Target Start/End: Original strand, 22073576 - 22073666
Alignment:
| Q |
303 |
gtgggtgtacaacattggttcggtttaagcgtctggatatagatgaagattcggcatgacctgttaatggcacatgtaacttgttattttg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
22073576 |
gtgggtgtacaacattggttcggtttaagcgtctggatatagatgaagattcagcatgacctgttaatggcacatctaacttgttattttg |
22073666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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