View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21622_low_20 (Length: 239)

Name: NF21622_low_20
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21622_low_20
NF21622_low_20
[»] chr6 (5 HSPs)
chr6 (1-226)||(26008216-26008441)
chr6 (1-226)||(26126602-26126827)
chr6 (1-226)||(25573675-25573900)
chr6 (142-226)||(34986506-34986590)
chr6 (4-105)||(34986395-34986496)
[»] chr7 (2 HSPs)
chr7 (1-226)||(45049312-45049537)
chr7 (8-226)||(39711993-39712193)
[»] chr5 (2 HSPs)
chr5 (142-226)||(34028202-34028286)
chr5 (4-105)||(34028091-34028192)
[»] chr4 (2 HSPs)
chr4 (142-226)||(1060427-1060511)
chr4 (4-105)||(1060521-1060622)
[»] chr8 (2 HSPs)
chr8 (142-226)||(14937283-14937367)
chr8 (4-105)||(14937172-14937273)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26008216 - 26008441
Alignment:
Q  1 tgctatgatcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggat 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26008216 tgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaacttaaaattagattgatgggat 26008315  T
Q  101 agaacaaaataactattggtttgtggacaatcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26008316 agaacaaaataactattggtttgtggacaatcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactat 26008415  T
Q  201 gatacgaaattgcaactgttatgatg 226  Q
    ||||||||||||||||||||||||||    
T  26008416 gatacgaaattgcaactgttatgatg 26008441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26126602 - 26126827
Alignment:
Q  1 tgctatgatcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggat 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26126602 tgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaacttaaaattagattgatgggat 26126701  T
Q  101 agaacaaaataactattggtttgtggacaatcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26126702 agaacaaaataactattggtttgtggacaatcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactat 26126801  T
Q  201 gatacgaaattgcaactgttatgatg 226  Q
    ||||||||||||||||||||||||||    
T  26126802 gatacgaaattgcaactgttatgatg 26126827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 25573675 - 25573900
Alignment:
Q  1 tgctatgatcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggat 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25573675 tgctatgatcaatgaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaacttaaaattagattgatgggat 25573774  T
Q  101 agaacaaaataactattggtttgtggacaatcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25573775 agaacaaaataactattggtttgtggacaatcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactat 25573874  T
Q  201 gatacgaaattgcaactgttatgatg 226  Q
    |||||||||||||||| |||||||||    
T  25573875 gatacgaaattgcaacagttatgatg 25573900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 34986506 - 34986590
Alignment:
Q  142 ggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactatgatacgaaattgcaactgttatgatg 226  Q
    ||||||||||||||||||| || || |||| |||||||||||||| |||||||| ||||||||| ||| || ||| |||||||||    
T  34986506 ggatcaatggaaggttacagagatggaacaatatgtaagggtggaattgagttccctatgatacaaaactggaacagttatgatg 34986590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 34986395 - 34986496
Alignment:
Q  4 tatgatcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggataga 103  Q
    |||||||||| |||||  |||| ||||||| |  ||||||||| ||||||||||||||| ||| | ||||||||||||| ||| || |||||| || |||    
T  34986395 tatgatcaatgaaatactttaggatgatacatttaagtaattaaatacttttagtagattatcgttatttttaaacttataatcagtttgatgagagaga 34986494  T
Q  104 ac 105  Q
    ||    
T  34986495 ac 34986496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45049312 - 45049537
Alignment:
Q  1 tgctatgatcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggat 100  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  45049312 tgctatgatcaatgaaatatattggcatgatacgtacaagtaattagatacttttagtagatcatcgtcatttttaaacttaaaatttgattgatgggat 45049411  T
Q  101 agaacaaaataactattggtttgtggacaatcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactat 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45049412 agaacaaaataactattggtttgtggacagtcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatctgagttcactat 45049511  T
Q  201 gatacgaaattgcaactgttatgatg 226  Q
    ||||||||||||||||||||||||||    
T  45049512 gatacgaaattgcaactgttatgatg 45049537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 39711993 - 39712193
Alignment:
Q  8 atcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggatagaacaa 107  Q
    |||||| ||||||||||||||| ||| || ||||||||||||||| ||||| ||||||| ||  |||||| |||||||| ||||||||| || |||||||    
T  39711993 atcaatgaaatatattagcatggtacatataagtaattagatactcttagttgatcatcgtccgttttaagcttaaaatgagattgatgagagagaacaa 39712092  T
Q  108 aataactattggtttgtggacaatcaacccatggggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactatgatacga 207  Q
    |||||| ||||||||||||||||||                  ||||| |||| || ||||||||| | ||||| ||||||||||||||||||||||| |    
T  39712093 aataacaattggtttgtggacaatc------------------gaaggatacatagatgaaacagtgtataaggatggatttgagttcactatgatacaa 39712174  T
Q  208 aattgcaactgttatgatg 226  Q
    || ||||||||||||||||    
T  39712175 aactgcaactgttatgatg 39712193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 34028202 - 34028286
Alignment:
Q  142 ggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactatgatacgaaattgcaactgttatgatg 226  Q
    ||||||||||||||||||| || ||||||| |||||||||||||| |||||||| ||||||||| ||| || ||| |||||||||    
T  34028202 ggatcaatggaaggttacagagatgaaacaatatgtaagggtggaattgagttccctatgatacaaaactggaacagttatgatg 34028286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 34028091 - 34028192
Alignment:
Q  4 tatgatcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggataga 103  Q
    |||||||||| |||||  |||| ||||||| |  ||||||||| ||||||||||||||| ||| | ||||||||||||| ||| || |||||| || |||    
T  34028091 tatgatcaatgaaatactttaggatgatacatttaagtaattaaatacttttagtagattatcgttatttttaaacttataatcagtttgatgagagaga 34028190  T
Q  104 ac 105  Q
    ||    
T  34028191 ac 34028192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 1060511 - 1060427
Alignment:
Q  142 ggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactatgatacgaaattgcaactgttatgatg 226  Q
    ||||||||||||||||||| || ||||||| |||||||||||||| |||||||| ||||||||| ||| || ||| |||||||||    
T  1060511 ggatcaatggaaggttacagagatgaaacaatatgtaagggtggaattgagttccctatgatacaaaactggaacagttatgatg 1060427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 1060622 - 1060521
Alignment:
Q  4 tatgatcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggataga 103  Q
    |||||||||| |||||  |||| ||||||| |  ||||||||| ||||||||||||||| ||| | ||||||||||||| ||| || |||||| || |||    
T  1060622 tatgatcaatgaaatactttaggatgatacatttaagtaattaaatacttttagtagattatcgttatttttaaacttataatcagtttgatgagagaga 1060523  T
Q  104 ac 105  Q
    ||    
T  1060522 ac 1060521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 14937283 - 14937367
Alignment:
Q  142 ggatcaatggaaggttacaaagctgaaacagtatgtaagggtggatttgagttcactatgatacgaaattgcaactgttatgatg 226  Q
    ||||||||||||||||||| || || |||| |||||||||||||| |||||||| ||||||||| ||| || ||| |||||||||    
T  14937283 ggatcaatggaaggttacagagatggaacaatatgtaagggtggaattgagttccctatgatacaaaactggaacagttatgatg 14937367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 14937172 - 14937273
Alignment:
Q  4 tatgatcaataaaatatattagcatgatacgtacaagtaattagatacttttagtagatcatcttcatttttaaacttaaaattagattgatgggataga 103  Q
    |||||||||| |||||  |||| ||||||| |  ||||||||| ||||||||||||||| ||| | ||||||||||||| ||| || |||||| || |||    
T  14937172 tatgatcaatgaaatactttaggatgatacatttaagtaattaaatacttttagtagattatcgttatttttaaacttataatcagtttgatgagagaga 14937271  T
Q  104 ac 105  Q
    ||    
T  14937272 ac 14937273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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