View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_low_22 (Length: 238)
Name: NF21622_low_22
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26008199 - 26007978
Alignment:
| Q |
1 |
cttttaatttctctagtgatacaacaaaatatctatatttaagttgttctagtgactccgaaggtataatgaagtatacatatccatcacatgagttgca |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26008199 |
cttttaattgctctagtgatacaacaaaatatctatatttaagttgctctagtgactccgaaggtataatgaagtatacatatccatcacatgagttgca |
26008100 |
T |
|
| Q |
101 |
ataaaggcttaatgagaactacagataggatctttccttagttcatagaaccgaaacagccaaaaaacaaggacatcaaaacatgcctaagatgcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26008099 |
ataaaggcttaatgagaactacagataggatctttccttagttcatagaaccgaaacagccaaaaaacaaggacatcaaaacatgcctaagatgcttcaa |
26008000 |
T |
|
| Q |
201 |
tagataaatgaacctataagtt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26007999 |
tagataaatgaacctataagtt |
26007978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25573658 - 25573437
Alignment:
| Q |
1 |
cttttaatttctctagtgatacaacaaaatatctatatttaagttgttctagtgactccgaaggtataatgaagtatacatatccatcacatgagttgca |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25573658 |
cttttaattgctctagtgatacaacaaaatatctatatttaagttgctctagtgactccgaaggtataatgaagtatacatatccatcacatgagttgca |
25573559 |
T |
|
| Q |
101 |
ataaaggcttaatgagaactacagataggatctttccttagttcatagaaccgaaacagccaaaaaacaaggacatcaaaacatgcctaagatgcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25573558 |
ataaaggcttaatgagaactacagataggatctttccttagttcatagaacctaaacagccaaaaaacaaggacatcaaaacatgcctaagatgcttcaa |
25573459 |
T |
|
| Q |
201 |
tagataaatgaacctataagtt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
25573458 |
tagataaatgaacctataagtt |
25573437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26126585 - 26126364
Alignment:
| Q |
1 |
cttttaatttctctagtgatacaacaaaatatctatatttaagttgttctagtgactccgaaggtataatgaagtatacatatccatcacatgagttgca |
100 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26126585 |
cttttaattgctctagggatacaacaaaatatctatatttaagttgctctagtgactccgaaggtataatgaagtatacatatccatcacatgagttgca |
26126486 |
T |
|
| Q |
101 |
ataaaggcttaatgagaactacagataggatctttccttagttcatagaaccgaaacagccaaaaaacaaggacatcaaaacatgcctaagatgcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26126485 |
ataaaggcttaatgagaactacagataggatctttccttagttcatagaaccgaaacagccaaaaaacaaggacatcaaaacatgcctaagatgcttcaa |
26126386 |
T |
|
| Q |
201 |
tagataaatgaacctataagtt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26126385 |
tagataaatgaacctataagtt |
26126364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 34986305 - 34986265
Alignment:
| Q |
138 |
ttagttcatagaaccgaaacagccaaaaaacaaggacatca |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
34986305 |
ttagttcatagaaccgcaacagccaaaaagcaagggcatca |
34986265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 45049295 - 45049205
Alignment:
| Q |
1 |
cttttaatttctctagtgatacaacaaaatatctatatttaagttgttctagtgactccgaaggtataatgaagtatacatatccatcaca |
91 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
45049295 |
ctttgaattgctatagtgatacaacaaaatatctatatttaagttgctctaatgactctgaaggtataatgaagtatacatatccatcaca |
45049205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 34028005 - 34027953
Alignment:
| Q |
126 |
taggatctttccttagttcatagaaccgaaacagccaaaaaacaaggacatca |
178 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
34028005 |
taggatgttaccttagttcatagaaccgcaacagccaaaaagcaagggcatca |
34027953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 14937082 - 14937042
Alignment:
| Q |
138 |
ttagttcatagaaccgaaacagccaaaaaacaaggacatca |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
14937082 |
ttagttcatagaaccgcaacagccaaaaagcaagggcatca |
14937042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 1060712 - 1060752
Alignment:
| Q |
138 |
ttagttcatagaaccgaaacagccaaaaaacaaggacatca |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||| |
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|
| T |
1060712 |
ttagttcatagaaccgcaacagccaaaaagcaagggcatca |
1060752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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