View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21622_low_23 (Length: 217)
Name: NF21622_low_23
Description: NF21622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21622_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 49744159 - 49743975
Alignment:
| Q |
17 |
cacagatatcaccaaacttcaaattattgtgagcacgaaatttactccaaccaccacttagtgtatattgattatttaaagtgagattcaaatcagcatt |
116 |
Q |
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| T |
49744159 |
cacagatatcaccaaacttcaaattattgtgagcacgaaatttactccaaccaccacttagtgtatattgattatttaaagtgagattcaaatcagcatt |
49744060 |
T |
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| Q |
117 |
ccatggtctgtcttgatcaacaaaaagagtaacatttcttccttccatcctgtgcagatgtttcttagcaaattcaattggtatg |
201 |
Q |
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| T |
49744059 |
ccatggtctgtcttgatcaacaaaaagagtaatatttcttccttccatcctgtgcagatgtttcttagcaaattcaattggtatg |
49743975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 12867841 - 12867696
Alignment:
| Q |
22 |
atatcaccaaacttcaaattattgtgagcacgaaatttactccaaccaccacttagtgtatattgattatttaaagtgagattcaaatcagcattccatg |
121 |
Q |
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| T |
12867841 |
atatcaccaaatttcaaattattgtgagctcgaaatttactccaaccaccacttagtgtatattgattatttgaagtgatattaaaatcaacattccatg |
12867742 |
T |
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| Q |
122 |
gtctgtcttgatcaacaaaaagagtaacatttcttccttccatcct |
167 |
Q |
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| T |
12867741 |
ttttgttttgatcaacaaaaagagtaacctttcttcctttcatcct |
12867696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 15135824 - 15135639
Alignment:
| Q |
15 |
agcacagatatcaccaaacttcaaattattgtgagcacgaaatttactccaaccaccacttagtgtatattgattatttaaagtgagattcaaatcagca |
114 |
Q |
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|||||| | ||||||||| ||||||||||||||||||| |||| ||||||||||| |||||| | |||| ||||||| |||||||| ||||||| || |
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| T |
15135824 |
agcacaaacatcaccaaatttcaaattattgtgagcacagaattcactccaaccacttgttagtgcaaattgtttatttagagtgagatccaaatcaaca |
15135725 |
T |
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| Q |
115 |
ttccatggtctgtcttgatcaacaaaaagagtaacatttcttccttccatcctgtgcagatgtttcttagcaaattcaattggtat |
200 |
Q |
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||||||| ||| ||||||||||||||||| || |||||| | |||||||| |||||| |||| |||| |||||||| ||||||| |
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| T |
15135724 |
ttccatgttctatcttgatcaacaaaaaggatagcatttccttcttccatcatgtgcatatgtgtcttcacaaattcagttggtat |
15135639 |
T |
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